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. 2008 Apr 14;17(14):2212–2218. doi: 10.1093/hmg/ddn121

Table 1.

SNP alleles and frequencies by ethnicity

Gene SNP Chr Base pair Order in gene Allelesa European American MAFb Hispanic corresponding frequencyc P-value
Wnt3 rs142167 17 42150418 1 A/G 0.258 0.523 <0.0001
Wnt3 rs7216231 17 42170907 2 A/G 0.055 0.409 <0.0001
Wnt3 rs199525 17 42203002 3 G/T 0.22 0.159 0.07
Wnt3 rs70602 17 42214876 4 C/T 0.219 0.149 0.041
Wnt3 rs199501 17 42217772 5 A/G 0.256 0.538 <0.0001
Wnt3 rs199498 17 42220763 6 C/T 0.241 0.489 <0.0001
Wnt3 rs111769 17 42227151 7 C/T 0.416 0.258 <0.0001
Wnt3 rs3851781 17 42246300 8 C/T 0.474 0.657 <0.0001
Wnt3 hCV1139279 17 42248220 9 C/G 0.198 0.11 0.005
Wnt3 rs9890413 17 42256448 10 A/G 0.363 0.215 0.0002
Wnt3A rs708111 1 226257988 1 C/T 0.483 0.524 0.290
Wnt3A rs708114 1 226264119 2 C/T 0.469 0.557 0.034
Wnt3A rs3094912 1 226276438 3 A/T 0.454 0.5 0.228
Wnt3A rs3121310 1 226291447 4 A/G 0.308 0.382 0.055
Wnt3A rs752107 1 226313974 5 C/T 0.308 0.356 0.175
Wnt3A rs1745420 1 226318355 6 C/G 0.144 0.178 0.193
Wnt5A rs566926 3 55487719 1 A/C 0.261 0.333 0.55
Wnt7A rs1124480 3 13832970 1 C/T 0.459 0.418 0.274
Wnt7A rs9840696 3 13840076 2 A/G 0.375 0.392 0.651
Wnt7A rs6778046 3 13846680 3 C/T 0.369 0.415 0.212
Wnt7A rs9863149 3 13858361 4 C/T 0.315 0.216 0.004
Wnt7A rs934450 3 13862730 5 A/G 0.329 0.257 0.037
Wnt7A rs1433354 3 13872246 6 A/G 0.305 0.453 <0.0001
Wnt7A rs6442414 3 13881839 7 A/G 0.312 0.221 0.008
Wnt7A rs11128663 3 13887851 8 C/G 0.4 0.297 0.005
Wnt7A rs4685048 3 13897736 9 A/C 0.487 0.412 0.046
Wnt8A rs4835761 5 137445768 1 A/G 0.469 0.489 0.619
Wnt8A rs2040862 5 137447888 2 C/T 0.172 0.108 0.030
Wnt8A rs2306110 5 137455986 3 A/C 0.477 0.489 0.765
Wnt9B rs2165846 17 42296365 1 A/G 0.421 0.720 <0.0001
Wnt9B rs1530364 17 42306776 2 A/G 0.261 0.317 0.128
Wnt9B rs197915 17 42345521 3 A/G 0.434 0.432 0.972
Wnt11 rs663746 11 75571777 1 C/T 0.498 0.474 0.524
Wnt11 rs1533763 11 75578175 2 A/T 0.209 0.172 0.272
Wnt11 rs1533767 11 75583448 3 A/G 0.267 0.279 0.718
Wnt11 rs689095 11 75591735 4 A/G 0.307 0.324 0.667
Wnt11 rs596339 11 75594155 5 A/G 0.338 0.412 0.06
Wnt11 rs1568507 11 75596967 6 A/T 0.315 0.324 0.82

aMost common allele are listed first.

bMinor allele frequency.

cFrequency in Hispanic of European American minor allele.