Table 1.
Biological knowledge types represented in ConceptGen and their Concept Type(s)
| Biological knowledge type | Concept type(s) | Number of concepts |
|---|---|---|
| Biological processes | GO biological process | 2477 |
| Molecular functions | GO molecular function | 1075 |
| Cellular components | GO cellular component | 446 |
| Protein-centered interactions | MiMI | 6823 |
| Medical literature derived concepts | MeSH | 5214 |
| Human diseases | OMIM | 52 |
| Drug targets | Drug Bank | 256 |
| Chromosomal location | cytoband | 1178 |
| Molecular pathways | KEGG pathway; | 195 |
| Panther pathway; | 86 | |
| Biocarta pathway | 245 | |
| Transcription factor targets | Transfac | 119 |
| Protein families | Pfam | 770 |
| microRNA targets | MiRBase | 587 |
| Metabolic interactions | Metabolite | 960 |
| Differential expression profiles | Gene expression | 603 |
The total number of concepts is 21 086.