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. 2009 Dec 23;26(4):501–508. doi: 10.1093/bioinformatics/btp707

Table 6.

Simulation results with PMFA selecting q (and g) in two set-ups

q Set-up 2, Case III
New set-up
#(Inline graphic, ĝ = g)
with (ĝ, q) #(Inline graphic, ĝ = g)
with (ĝ, q)
g = 1 2 3 RI aRI g = 1 2 3 RI aRI
0 0 0 0 0.690 0.389 0 0 0 0.774 0.552
1 0 17 9 0.979 0.958 0 0 0 0.973 0.945
2 0 18 5 0.983 0.965 0 31 19 0.994 0.989
3 0 0 1 0.970 0.939 0 0 0 0.984 0.967

RI and aRI were calculated with selected ĝ and fixed q.