Table 4.
Integrative databases in plants
| Database name | Species | URL |
|---|---|---|
| TAIR | Arabidopsis | http://www.arabidopsis.org/ |
| SIGnAL | Arabidopsis | http://signal.salk.edu/ |
| RARGE | Arabidopsis | http://rarge.psc.riken.jp/ |
| Rice Genome Annotation Project | Rice | http://rice.plantbiology.msu.edu/ |
| RAP-DB | Rice | http://rapdb.dna.affrc.go.jp/ |
| SOL genomics network | Solanaceae | http://solgenomics.net/ |
| Gramene | Gramineae | http://www.gramene.org/ |
| GrainGenes | Triticeae and Avena | http://wheat.pw.usda.gov/GG2/index.shtml |
| SoyBase | Soybean | http://www.soybase.org/ |
| MazieGDB | Maize | http://www.maizegdb.org/ |
| CyanoBase | Cyanobacteria | http://genome.kazusa.or.jp/cyanobase/ |
| GDR (Genome Database for Rosaceae) | Rosaceae | http://www.bioinfo.wsu.edu/gdr/ |
| Brassica Genome Gateway | Brassica | http://brassica.bbsrc.ac.uk/ |
| Cucurbit Genomics Database | Cucurbitaceae | http://www.icugi.org/ |
| Phytozome | Plant species (whole genome data available) | http://www.phytozome.net/ |
| PlantGDB | Plant species (whole genome and/or large-scale EST data available) | http://www.plantgdb.org/ |
| EnsemblPlants | Plant species (whole genome data available) | http://plants.ensembl.org/index.html |
| ChloroplastDB | Plant species (Chloroplast genome data available) | http://chloroplast.cbio.psu.edu/ |
| KEGG PLANT | Plant species (whole genome and/or large-scale EST data available) | http://www.genome.jp/kegg/plant/ |