Table 2.

Performance of different embeddings of PF01018 at iteration 5

Embedding replicate performance	TPs	TP coveragea	FPs	FP frequencya
Best	507	0.98	67	0.07
Worse	116	0.22	419	0.78

^aTP coverage is calculated by dividing the frequency of TPs at iteration 5 by family size. FP frequency is defined as the number of FPs found divided by the number of significant alignments found by the search.