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. Author manuscript; available in PMC: 2011 Mar 23.
Published in final edited form as: Biochemistry. 2010 Mar 23;49(11):2307–2316. doi: 10.1021/bi902077d

Table 1.

Predicted interaction scores of all 27 possible combinations of peptides A, B, C. The lowest scores with the same ratio of peptides are highlighted in bold.

Species Interaction score

Sequence-
based
Structure-
based
AAA 20 9
BBB 30 18
CCC 29 20

ABB −1 −3
BAB −7 6
BBA 0 4

AAB −7 −7
ABA −5 5
BAA −6 0

BCC −5 −2
CBC −3 4
CCB −1 −4

BBC −3 −1
CBB 1 −3
BCB −6 0

ACC 2 17
CAC 22 32
CCA 32 19

AAC −2 14
ACA 21 27
CAA 32 16

ABC −29 −4
ACB −4 1
BAC −7 9
BCA −7 4
CAB −7 3
CBA 5 2