Table 1.
The results of sib-TDT model analysis using the large family sample set.
| Location | unadjusted | permuted | ||||
|---|---|---|---|---|---|---|
| SNP ID | CHR | bp | Gene | p value | p value | Bonferroni |
| AAFC02065030 | 2 | 37,055,124 | 1.93E-08 | 3.61E-05 | 5.45E-05 | |
| rs29020694 | 4 | 90,418,076 | 1.87E-06 | 4.05E-03 | 5.29E-03 | |
| AAFC02132123_1 | 4 | 117,126,683 | LOC100138299 | 9.38E-07 | 1.98E-03 | 2.65E-03 |
| AAFC02132123_2 | 4 | 117,126,810 | LOC100138299 | 3.38E-06 | 7.33E-03 | 9.55E-03 |
| AAFC02012009 | 5 | 30,554,866 | LOC507184 | 3.53E-06 | 7.69E-03 | 9.98E-03 |
| rs29003193 | 5 | 66,501,993 | 3.12E-08 | 5.79E-05 | 8.82E-05 | |
| rs29012226 | 5 | 67,701,052 | ANKS1B | 6.63E-07 | 1.38E-03 | 1.87E-03 |
| SCAFFOLD106936 | 6 | 98,767,642 | 6.35E-07 | 1.32E-03 | 1.80E-03 | |
| rs29016161 | 7 | 24,604,791 | 2.45E-06 | 5.31E-03 | 6.93E-03 | |
| rs29017305 | 9 | 62,946,258 | BACH2 | 2.30E-06 | 4.97E-03 | 6.49E-03 |
| rs29013631 | 10 | 38,725,566 | 2.25E-06 | 4.87E-03 | 6.36E-03 | |
| rs29022366 | 12 | 80,076,729 | LOC786668 | 2.74E-06 | 5.95E-03 | 7.75E-03 |
| rs29010388 | 14 | 4,145,186 | 4.20E-07 | 8.56E-04 | 1.19E-03 | |
| AAFC02138417 | 15 | 70,632,844 | 3.31E-06 | 7.19E-03 | 9.36E-03 | |
| rs29010371 | 16 | 63,558,950 | FAM129A | 1.06E-06 | 2.26E-03 | 3.00E-03 |
| rs29009572 | 17# | 37,575,810 | 1.29E-06 | 2.76E-03 | 3.65E-03 | |
| rs29021871 | 17 | 44,213,230 | 1.06E-06 | 2.25E-03 | 2.99E-03 | |
| CART | 20# | 4,922,252 | CART | 3.57E-08 | 6.75E-05 | 1.01E-04 |
| rs29018531 | 20 | 38,814,738 | 1.32E-06 | 2.82E-03 | 3.72E-03 | |
| AAFC02028192 | 21 | 5,702,403 | MEF2A | 1.24E-07 | 2.49E-04 | 3.49E-04 |
| rs29022862 | 21 | 12,595,937 | 1.85E-07 | 3.73E-04 | 5.22E-04 | |
| rs29009825 | 21 | 24,827,395 | 1.90E-06 | 4.11E-03 | 5.38E-03 | |
| rs29012664 | 22 | 42,415,179 | FHIT | 5.30E-07 | 1.10E-03 | 1.50E-03 |
| NW_930303_1 | 24# | 29,286,364 | 1.02E-07 | 2.05E-04 | 2.90E-04 | |
| NW_930303_2 | 24# | 29,286,314 | 3.06E-07 | 6.17E-04 | 8.64E-04 | |
| SCAFFOLD176855 | 28 | 26,871,628 | SLC29A3 | 1.03E-06 | 2.18E-03 | 2.90E-03 |
| SCAFFOLD68962 | X | 7,641,750 | 3.15E-06 | 6.86 E-03 | 8.91E-03 |
Locations were determined by blast to bovine sequence version 4.0. All other locations denoted by # were either determined from bovine sequence version 2.0, 4.1 or the Maryland sequence assembly. Permuted p values reported here are from a 10,000,000 genome-wide SNP permutation.