Table 3.
Comparison of SNPs observed in this study with locations indentified in other studies.
| Analysis | Location | Previously | Peak | |||
|---|---|---|---|---|---|---|
| CHR | SNP ID | Method | p-value | Mb | Observed | Location Mb |
| 1 | rs29009859 | sib-TDT | 2.0 × 10-5 | 89.7 | [14] | 106.5 |
| 5 | AAFC02012009 | sib-TDT | **9.9 × 10-3 | 30.6 | No | |
| 5 | E25B16-36408-3 | sib-TDT | **8.8 × 10-5 | 66.5 | No | |
| 5 | rs29012226 | sib-TDT | **1.9 × 10-3 | 67.7 | No | |
| 5 | rs29024670 | sib-TDT | 3.0 × 10-5 | 112.8 | [13] | 107.0 |
| 6 | SCAFFOLD106936_12205 | sib-TDT | **1.8 × 10-3 | 98.8 | No | |
| 10 | rs29024570 | Case-control | *4.3 × 10-4 | 4.4 | No | |
| 10 | rs29013631 | sib-TDT | **6.5 × 10-3 | 38.7 | No | |
| 10 | rs29015623 | sib-TDT | 9.0 × 10-5 | 48.0 | [13] | 40.0 |
| 17 | rs29021871 | sib-TDT | **3.0 × 10-3 | 44.2 | No | |
| 19 | rs29027102 | sib-TDT | 2.0 × 10-5 | 62.5 | [14] | 53.5 |
| 20 | rs29018531 | sib-TDT | **3.7 × 10-3 | 38.8 | [13] | 46.0 |
| 20 | CART-SNP | sib-TDT | **1.0 × 10-4 | 4.9# | No | |
| X | SCAFFOLD68962_9331 | sib-TDT | **1.0 × 10-5 | 7.6 | No | |
| X | SCAFFOLD285727_12117 | sib-TDT | 1.0 × 10-5 | 85.5 | [14] | 112.5 |
Sib-TDT p values are reported as unadjusted unless denoted by ** which indicates Bonferroni corrected values that pass 10,000,000 permutations. All case control p-values are reported are as unadjusted and suggested significance is denoted as *. Only SNPs with appreciable or significant p-values located within the confidence intervals of ref# [14] or within 10 cM of ref# [13] are reported here. The location determined by older bovine sequence version 2.0 is denoted by #. All other locations were determined by blast to bovine sequence version 4.0 and are reported in mega bases. The previous studies reported location in cM however for the sake of uniformity the location is reported here, based on marker positions, in Mb.