Table 2.
CP220 CDS | T4 Lengtha | CP220 Lengtha | T4 Gene Functionb | CP220/T4 Identity (%) E valuec |
---|---|---|---|---|
CPT_0001 | 610 | 744 | Gp17 Terminase subunit with nuclease and ATPase activity; binds single-stranded DNA, Gp16 and Gp20 | 143/436 (32%) E = 4e-47 |
CPT_0005 | 516 | 503 | Gp39 DNA topoisomerase large subunit | 186/516 (35%) E = 4e-73 |
CPT_0009 | 342 | 347 | Gp61 DNA primase subunit | 73/330 (22%) 0.017 |
CPT_0010 | 319 | 304 | Gp44 Clamp loader subunit, DNA polymerase accessory protein | 95/319 (29%) E = 8e-27 |
CPT_0011 | 305 | 352 | RNaseH ribonuclease | 56/151 (37%) E = 6e-16 |
CPT_0029 | 157 | 178 | Gp49 EndoVII packaging and recombination endonuclease VII | 28/108 (25%) E = 0.11 |
CPT_0030 | 524 | 569 | Gp20 Portal vertex protein of head | 130/456 (28%) E = 5e-40 |
CPT_0033 | 487 | 429 | Gp30 DNA ligase | 128/484 (26%) E = 2e-23 |
CPT_0034 | 659 | 516 | Gp18 Tail sheath monomer | 58/235 (24%) E = 3e-04 |
CPT_0037 | 134 | 120 | Gp25 Baseplate wedge subunit | 26/66 (39%) E = 2e-07 |
CPT_0041 | 660 | 1214 | Gp6 Baseplate wedge subunit | 86/389 (22%) E = 0.025 |
CPT_0045 | 163 | 252 | Gp19 Tail tube protein | 49/176 (27%) E = 9e-11 |
CPT_0046 | 150 | 158 | Gp4 Head completion protein | 44/147 (29%) E = 5e-08 |
CPT_0048 | 185 | 255 | Gp55 Sigma factor for T4 late transcription | 33/123 (26%) E = 0.37 |
CPT_0051 | 521 | 444 | Gp23 Major head protein | 131/412 (31%) E = 2e-41 |
CPT_0053 | 659 | 578 | Gp18 Tail sheath protein | 149/436 (34%) E = 1e-51 |
CPT_0058 | 163 | 196 | Gp19 Tail tube protein | 41/170 (24%) E = 5e-09 |
CPT_0115 | 898 | 882 | Gp43 DNA polymerase | 244/901 (27%) E = 4e-56 |
CPT_0125 | 475 | 445 | Gp41 DNA primase-helicase subunit | 120/453 (26%) E = 1e-34 |
CPT_0148 | 587 | 472 | UvsW RNA-DNA and DNA-DNA helicase, ATPase | 124/407 (30%) E = 5e-42 |
CPT_0174 | 272 | 456 | Gp15 Tail sheath stabilizer and completion protein | 54/214 (25%) E = 1e-05 |
CPT_0177 | 301 | 306 | Gp32 Single-stranded DNA binding protein | 65/212 (30%) E = 6e-12 |
CPT_0181 | 374 | 361 | RnlA RNA ligase 1 and tail fiber attachment catalyst | 80/297 (26%) E = 3e-10 |
CPT_0193 | 212 | 236 | Gp21 Prohead core protein protease | 52/153 (33%) E = 2e-08 |
a Length refers to the number of amino-acid residues in the CDS and are calculated from the genomic sequence
b T4 gene product and functions are according to Miller [26]
c Identity and E values are from NCBI BLAST results, performed on 5th January 2009