Table 3.
Putative CP220 CDSs showing homology to proteins in Campylobacter and closely related species Helicobacter, Arcobacter and Wolinella
| CP220 CDS | CP220 Lengtha |
Source Organism, Functionb Lengtha, Identity (%) (E value)c |
|---|---|---|
| CPT_0017 | 264 |
Arcobacter butzleri RM4018.; Radical SAM domain protein 254, 115/252 (45%) (2e-53) |
| CPT_0040 | 70 |
Helicobacter hepaticus ATCC 51449,; Hypothetical protein HH0764 62, 22/57 (38%) (4e-04) |
| CPT_0066 | 328 |
Campylobacter upsaliensis RM3195.; Hypothetical protein CUPA0063 305, 83/296 (28%) (2e-17) |
| CPT_0084 | 342 |
Campylobacter fetus subsp. fetus 82-40.; Heme biosynthesis protein, putative 354, 45/178 (25%) (1e-07) |
| CPT_0095 | 144 |
Campylobacter jejuni RM1221,; Putative lipoprotein 125, 45/120 (37%) (2e-12) |
| CPT_0105 | 202 |
Campylobacter curvus 525.92.; hypothetical protein CCV52592_0059 189, 109/200 (54%) (1e-51) |
| CPT_0123 | 143 |
Helicobacter hepaticus ATCC 51449.; Starvation-inducible DNA-binding protein Dps 156, 42/140 (30%) (4e-12) |
| CPT_0127 | 205 |
Campylobacter lari RM2100.; Hypothetical protein CLA1217 211, 66/109 (60%) (2e-32) |
| CPT_0137 | 306 |
Wolinella succinogenes DSM 1740.; Molybdenum cofactor biosynthesis protein A 321, 33/98 (33%) (0.002) |
| CPT_0145 | 80 |
Helicobacter pylori.; Putative transposase OrfA 210, 31/69 (44%) (3e-09) |
| CPT_0158 | 182 |
Campylobacter upsaliensis RM3195.; Thymidine kinase 167, 54/170 (31%) (3e-15) |
| CPT_0164 | 181 |
Campylobacter fetus subsp. fetus 82-40.; Polysaccharide deacetylase 305, 40/151 (26%) (0.006) |
| CPT_0165 | 212 |
Campylobacter fetus subsp. fetus 82-40.; FAD-dependent thymidylate synthase 206, 113/200 (56%) (4e-52) |
| CPT_0172 | 955 |
Campylobacter jejuni RM1221.; Hypothetical protein CJE0595 426, 71/176 (40%) (3e-32) |
| CPT_0191 | 171 |
Helicobacter hepaticus ATCC 51449.; Hypothetical protein HH0767 188, 61/187 (32%) (6e-15) |
a Length refers to the number of amino-acid residues in the CDS and are calculated from the genomic sequence
b Gene product and putative function
c Identity and E values are from NCBI BLAST results, performed on 5th January 2009