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. 2009 Jun;25(6):583–601. doi: 10.1089/aid.2008.0240

Table 1.

Description and Sequences of Primers Used for PCR Amplification of env, nef, and int Genes from Tissue Proviral DNA

Primer number Primer coordinatesa Primer description Primer sequence (5′ to 3′)
952 6360 env outer forward GAGGCGTGCTCTAATACAT
953 9299 env outer reverse ATCATCATCATCTACATCATC
954 6474 env inner forward CCGAAGAAGGCTAAGGCTAATACA
955 9210 env inner reverse ATTGTCCCTCACTGTATCCCTG
959 8806 nef outer forward AGACGGTGGAGACAGAGGTGG
960 9950 nef outer reverse TCAATCTGCCAGCCTCTCCG
961 8947 nef inner forward CCAACCAGTGTTCCAGAGGC
962 9845 nef inner reverse CCCGTAACATCCCCTTTGTGG
963 4021 int outer forward CCTCCCTTAGTCAGATTAGTC
964 5433 int outer reverse GGGAAGATTACTCTGCTG
965 4106 int inner forward GGCAATCAAGAGAAGGAAAGGC
966 5378 int inner reverse CATAACAAGCCTTCTGTAGGTCC
a

Primer coordinates based on PGm5.3 genome.4