Skip to main content
. Author manuscript; available in PMC: 2011 May 15.
Published in final edited form as: Gene. 2010 Feb 21;456(1-2):24–35. doi: 10.1016/j.gene.2010.02.007

Table 1.

Haplotype and nucleotide diversity of the Msp-5 gene from Thai, Indonesian and Brazilian populations of Plasmodium vivax

Population H M S h±S.D. π±S.E. πS±S.E πN±S.E
Thailand (n=126)
  Exon I 50 158 148 0.873±0.027 0.05014±0.00472***,††† 0.02149±0.00526*** 0.06175±0.00656***,###
  Exon II 4 3 3 0.519±0.013 0.00179±0.00159 0.00000±0.00000 0.00253±0.00227
  Exons I & II 54 161 151 0.884±0.025 0.03723±0.00348††† 0.01567±0.00398 0.04603±0.00506###
  Intron 2 1 1 0.077±0.032 0.00028±0.00012 - -
 Northwestern (n=73)
  Exon I 48 156 146 0.983±0.006 0.05970±0.00538***,††† 0.02611±0.00643*** 0.07331±0.00734***,###
  Exon II 4 3 3 0.341±0.061 0.00123±0.00100 0.00000±0.00000 0.00175±0.00150
  Exons I & II 50 159 149 0.984±0.006 0.04405±0.00391††† 0.01901±0.00464 0.05426±0.00539###
  Intron 2 1 1 0.129±0.051 0.00047±0.00019 - -
 Southern (n=53)
  Exon I 3 72 71 0.365±0.068 0.01431±0.00234***,††† 0.00847±0.00304** 0.01665±0.00320***
  Exon II 2 1 1 0.038±0.036 0.00018±0.00018 0.00000±0.00000 0.00018±0.00017
  Exons I & II 3 73 72 0.365±0.068 0.01058±0.00175††† 0.00620±0.00226 0.01235±0.00225
  Intron 2 1 1 0.038±0.036 0.00009±0.00009 - -
Indonesia (n=25)
  Exon I 20 138 132 0.977±0.019 0.05747±0.00523***,††† 0.02723±0.00659*** 0.06961±0.00739***,###
  Exon II 2 1 1 0.080±0.072 0.00027±0.00025 0.00000±0.00000 0.00038±0.00037
  Exons I & II 20 139 133 0.977±0.019 0.04210±0.00402††† 0.01978±0.00514 0.05112±0.00563###
  Intron 2 1 1 0.220±0.100 0.00079±0.00036 - -
Brazil (n=24)
  Exon I 13 115 111 0.924±0.032 0.05043±0.00515***,††† 0.02387±0.00642*** 0.06112±0.00703***,###
  Exon II 5 4 4 0.627±0.093 0.00250±0.00133 0.00183±0.00187 0.00278±0.00177
  Exons I & II 14 119 115 0.931±0.033 0.03764±0.00383††† 0.01789±0.00482 0.04564±0.00526###
  Intron 3 2 2 0.359±0.110 0.00143±0.00049 - -

H = the number of haplotypes. M = the number of mutations. S = the number of segregating sites.

Tests of the hypothesis that mean πS equals that for πN:

#

p<0.05

##

p<0.01

###

p<0.001

Tests of the hypothesis that mean π, πS or πN of exon 1 equals the corresponding value of exon 2:

*

p<0.05

**

p<0.01

***

p<0.001

Tests of the hypothesis that mean π equals that for π of intron:

†

p<0.05

††

p<0.01

†††

p<0.001