Table 2. Number and percentage of genes significantly different between each pair of conditions at different significance thresholds.
Statistical threshold | WT vs. AP in vitro | WT vs. AP in vivo | WT vitro vs. vivo | AP vitro vs. vivo |
P<0.05 | 137 (5.9%) | 167 (7.2%) | 266 (11.4%) | 203 (8.7%) |
P<0.01 | 57 (2.45%) | 59 (2.53%) | 124 (5.32%) | 95 (4.08%) |
P<0.05 + FDR* | 9 (0.39%) | 9 (0.39%) | 32 (1.37%) | 20 (0.86%) |
*Benjamini and Hochberg false-discovery rate (FDR) test.