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. 2010 Apr 14;5(4):e10057. doi: 10.1371/journal.pone.0010057

Table 1. Genes and primer sequences used in phylogenetic analyses.

Gene Primer Name Primer Sequence Reference
Nuclear
18S rDNA
1 A 5′-AACCTGGTTGATCCTGCCAGT-3′ Apakupakul et. al., 1999
L 5′-CCAACTACGAGCTTTTTAACTG-3′ Apakupakul et. al., 1999
2 C 5′-CGGTAATTCCAGCTCCAATAG-3′ Apakupakul et. al., 1999
Y 5′-CAGACAAATCGCTCCACCAAC-3′ Apakupakul et. al., 1999
3 O 5′-AAGGGCACCACCAGGAGTGGAG-3′ Apakupakul et. al., 1999
B 5′-TGATCCTTCCGCAGGTTCACCT-3′ Apakupakul et. al., 1999
28S rDNA
1 28srD1a 5′-CCCSCGTAAYTTAAGCATAT-3′ Prendini et al., 2005
28sB 5′-TCGGAAGGAACCAGCTAC-3′ Whiting, 2002
2 28sA 5′-GACCCGTCTTGAAGCACG-3′ Whiting, 2002
28SBout 5′-CCCACAGCGCCAGTTCTGCTTACC-3′ Prendini et al., 2005
3 28srD5a 5′-GGYGTTGGTTGCTTAAGACAG-3′ Whiting, 2002
28srD7b1 5′-GACTTCCCTTACCTACAT-3′ Whiting, 2002
Mitochondrial
12s rDNA
12Sa 5′-AAACTAGGATTAGATACCCTATTAT-3′ Simon et al., 1994
12Sb 5′-AAGAGCGACGGGCGATGTGT-3′ Simon et al., 1994
COI
LCO1490 5′-GGTCAACAAATCATAAAGATATTGG-3′ Folmer et al., 1994
HCO2198 5′-TAAACTTCAGGGTGACCAAAAAATCA-3′ Folmer et al., 1994