Table 1. List of modules where miRNAs have been selected as high-scoring regulators.
| Module ID | Number of genes in the module | GO categories enriched for the module (p<0.05) | Regulators | Score |
| 15 | 73 | None | MAFB | 3065 |
| NFIB | 2774 | |||
| MSRB2 | 713 | |||
| IGFALS | 464 | |||
| NR2C1 | 457 | |||
| CCL23 | 392 | |||
| MORF4L1 | 288 | |||
| FOS | 249 | |||
| let-7c | 231 | |||
| miR-125b | 209 | |||
| 17 | 17 | Digestion | NFIB | 3785 |
| Proteolysis | HEYL | 2361 | ||
| Lipid catabolic process | PLA2G1B | 2164 | ||
| miR-216 | 1085 | |||
| CCRL2 | 780 | |||
| MC5R | 327 | |||
| TRAF1 | 285 | |||
| CDX1 | 261 | |||
| DLX2 | 254 | |||
| E2F1 | 251 | |||
| IFNGR1 | 250 | |||
| CCR9 | 244 | |||
| TACR3 | 215 | |||
| 18 | 6 | Immune response | HOXC5 | 1937 |
| HMGA1 | 1007 | |||
| miR-142-5p | 863 | |||
| miR-142-3p | 709 | |||
| HLA-DRB1 | 380 | |||
| CCL5 | 241 | |||
| AXL | 215 | |||
| CXCL14 | 214 | |||
| 25 | 9 | None | miR-200a | 1786 |
| PPP1R1B | 727 | |||
| GPR30 | 512 | |||
| PTGER3 | 456 | |||
| ZNF157 | 320 | |||
| GNB3 | 262 | |||
| GNG5 | 209 | |||
| 29 | 4 | Actomyosin structure organization and biogenesis | PPP1R12B | 7346 |
| Smooth muscle contraction | miR-133a | 1216 | ||
| Smooth muscle fiber development | TSC22D1 | 1209 | ||
| Elastic fiber assembly | ANGPTL2 | 353 | ||
| Striated muscle development | miR-145 | 220 | ||
| 35 | 20 | None | NFATC1 | 2827 |
| SH3BP1 | 2162 | |||
| FMNL2 | 699 | |||
| RASSF4 | 381 | |||
| GNAQ | 290 | |||
| CTNNBIP1 | 288 | |||
| miR-181* | 249 | |||
| 94 | 3 | Folic acid metabolic process | miR-10a | 253 |
| Regulation of Notch signaling pathway | ||||
| Folic acid transport |
All regulators that are above cutoff are listed for each module, and ordered according to their decreasing score value. MicroRNA genes are highlighted in bold.