Table 2.

Correlation coefficients between score S and RMSD for twenty standard decoy sets

Decoy set	PDB id	S θ	S ψ	S D	S pair
Rosetta a	4ubpA	0.55	0.65	0.38	0.46
Rosetta	2acy	0.45	0.74	0.48	0.57
Rosetta	1aiu	0.60	0.46	0.69	0.57
Rosetta	1ew4	0.60	0.71	0.65	0.72
Rosetta	1ughI	0.26	0.41	0.57	0.51
Rosetta	1kpeA	0.12	0.45	0.37	0.54
Rosetta	1fkb	−0.11	0.48	0.66	0.04
Rosetta	1bm8	0.24	0.10	0.10	0.30
Rosetta	2chf	0.55	0.07	0.45	0.45
Rosetta	1dhn	0.18	0.50	0.51	0.39
Rosetta	1ptq	0.78	0.54	−0.45	0.01
Rosetta	1scjB	−0.09	0.46	0.57	0.50
Rosetta	1a19A	0.45	−0.68	0.68	0.29
Rosetta	1cc8A	−0.18	0.52	0.34	0.58
lmds b	2ovo	0.08	0.16	0.36	0.65
lmds	1igd	0.28	0.23	0.08	0.11
4state c	1sn3	0.38	0.18	0.29	−0.03
4state	4pti	0.22	−0.08	−0.20	−0.07
lattice ssfit d	1pgb	0.73	0.12	0.61	−0.02
semfold e	1khmA	0.01	−0.42	−0.14	−0.07

^aAll atom decoy sets from Rosetta@home, available at http://depts.washington.edu/bakerpg/decoys/

^bAll atom decoy sets from Keasar and Levitt ⁴⁴

^cAll atom decoy sets from Park and Levitt ⁴⁵

^dAll atom decoy sets from Xia et al ⁴⁶

^eAll atom decoy set from Samudrala and Levitt ⁴⁷

The four decoy sets lmds, 4 state. lattice ssfit and semfold are available from the Decoys ‘R’ us repository ²⁹.