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. 2010 Apr 15;5(4):e10197. doi: 10.1371/journal.pone.0010197

Table 1. Primer and probe sequences used in the quantitative PCR assays developed in this study.

PCR Assay PCR Conditions Amplicon Size Primer/Probe Primer/Probe Sequence
Mobiluncus spp. 60°C annealing, 39 s 219 bp 805F_Mob 5′-CCACGCTGTAAACGTTGGGAA-3′
72°C extension, 30 s 1023R_Mob_curt 5′-TGGCCCATCTCTGGAACCA-3′
1024R_Mob_mul 5′-CCACACCATCTCTGGCATG-3′
Mob_838-861 5′-FAM-ATGCTATCCTGTGTTTCTGCGCCGTAG-TAMRA-3′
Lactobacillus iners 55°C annealing, 39 s 76 bp 165F_Liners 5′-GATGCTAATACCGGATAAYAACAGAT-3′
72°C extension, 30 s 241R_Liners 5′-CACCGCAGGTCCATCCAAGA-3′
Liners_186-213 5′-FAM-TGCCTATCAACTGTTTAAAAGATGGTTCT-TAMRA-3′
Lactobacillus jensenii 61°C annealing, 30 s 69 bp 988_Ljens 5′-GTCTTGACATCCTTTGACCAC-3′
72°C extension, 30 s 1057R_Ljens 5′-CATGCACCACCTGTCTCTTT-3′
Ljens_1009-1028 5′-FAM-CTAAGAGATTAGGTTTTCCC-MGBNFQ-3′