Table 3.
SNPs | Allele frequency | Genotype frequency | Association | Power (G %) | |||
---|---|---|---|---|---|---|---|
DM | CRI | DM | CRI | Allele | Genotype | ||
(n = 225) (n = 196) |
(n = 225) | (n = 196) | (df = 1) | (df = 2) | |||
ADPRT1 T>C |
T = 0.91 C = 0.09 |
T = 0.925 C = 0.075 |
TT = 0.87 TC = 0.12 CC = 0.01 |
TT = 0.83 TC = 0.16 CC = 0.01 |
χ2 = 0.21; P = 0.64, P* = 0.13 |
χ2 = 1.61; P = 0.45; P* = 0.11 |
12 |
ADPRT1 A>G |
A = 0.91 G = 0.09 |
A = 0.92 G = 0.08 |
AA = 0.83 AG = 0.17 GG = 0.00 |
AA = 0.84 AG = 0.14 GG = 0.02 |
χ2 = 0.07; P = 0.79; P* = 0.13 |
χ2 = 3.3; P = 0.19; P* = 0.14 |
8 |
AKR1B1 G>C |
G = 0.93 C = 0.07 |
G = 0.93 C = 0.07 |
GG = 0.86 GC = 0.14 CC = 0.00 |
GG = 0.89 GC = 0.11 CC = 0.00 |
χ2 = 0.88; P = 0.35; P* = 0.15 |
χ2 = 0.94; P = 0.33 (df = 1); P* = 0.14 |
0 |
RAGE -429T>C |
T = 0.87 C = 0.13 |
T = 0.88 C = 0.12 |
TT = 0.77 TC = 0.22 CC = 0.01 |
TT = 0.81 TC = 0.14 CC = 0.05 |
χ2 = 0.04; P = 0.84; P* = 0.11 |
χ2 = 8.68; P = 0.013; P* = 0.015 OR = 9.03, 95% CI = (1.09<OR<74.26) |
7 |
RAGE 63 bp ins/del |
Ins = 0.96 Del = 0.04 |
Ins = 0.97 Del = 0.03 |
Ins/Ins = 0.95 Ins/Del = 0.05 Del/Del = 0.00 |
Ins/Ins = 0.91 Ins/Del = 0.09 Del/Del = 0.00 |
χ2 = 0.26; P = 0.60; P* = 0.15 |
P* = 0.06 | 12 |
GFPT2 C>T |
C = 0.78 T = 0.22 |
C = 0.72 T = 0.28 |
CC = 0.50 CT = 0.45 TT = 0.05 |
CC = 0.60 CT = 0.37 TT = 0.03 |
χ2 = 3.92; P = 0.047; P* = 0.03 OR = 1.38, 95% CI = (1.02<OR<1.98) |
χ2 = 4.5; P = 0.11; P* = 0.04 |
51 |
PAI-1 4G/5G (del/ins) | 4G = 0.52 5G = 0.48 |
4G = 0.49 5G = 0.51 |
4G4G = 0.23 4G5G = 0.52 5G5G = 0.25 |
4G4G = 0.29 4G5G = 0.46 5G5G = 0.25 |
χ2 = 0.84; P = 0.36; P* = 0.06 |
χ2 = 2.5; P* = 0.29 |
14 |
P:P value for Pearson's chi-square test
P*: Fisher's exact P value.