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. 2010 Mar 31;11:52. doi: 10.1186/1471-2350-11-52

Table 3.

Allele and genotype frequencies of SNPs in ADPRT1, AKR1B1, RAGE, GFPT2, PAI and their association status with diabetic CRI, and the power of sample size to detect association at 5% significance level.

SNPs Allele frequency Genotype frequency Association Power (G %)
DM CRI DM CRI Allele Genotype
(n = 225)
(n = 196)
(n = 225) (n = 196) (df = 1) (df = 2)
ADPRT1
T>C
T = 0.91
C = 0.09
T = 0.925
C = 0.075
TT = 0.87
TC = 0.12
CC = 0.01
TT = 0.83
TC = 0.16
CC = 0.01
χ2 = 0.21;
P = 0.64,
P* = 0.13
χ2 = 1.61;
P = 0.45;
P* = 0.11
12
ADPRT1
A>G
A = 0.91
G = 0.09
A = 0.92
G = 0.08
AA = 0.83
AG = 0.17
GG = 0.00
AA = 0.84
AG = 0.14
GG = 0.02
χ2 = 0.07;
P = 0.79;
P* = 0.13
χ2 = 3.3;
P = 0.19;
P* = 0.14
8
AKR1B1
G>C
G = 0.93
C = 0.07
G = 0.93
C = 0.07
GG = 0.86
GC = 0.14
CC = 0.00
GG = 0.89
GC = 0.11
CC = 0.00
χ2 = 0.88;
P = 0.35;
P* = 0.15
χ2 = 0.94;
P = 0.33
(df = 1);
P* = 0.14
0
RAGE
-429T>C
T = 0.87
C = 0.13
T = 0.88
C = 0.12
TT = 0.77
TC = 0.22
CC = 0.01
TT = 0.81
TC = 0.14
CC = 0.05
χ2 = 0.04;
P = 0.84;
P* = 0.11
χ2 = 8.68;
P = 0.013;
P* = 0.015
OR = 9.03, 95% CI = (1.09<OR<74.26)
7
RAGE
63 bp ins/del
Ins = 0.96
Del = 0.04
Ins = 0.97
Del = 0.03
Ins/Ins = 0.95
Ins/Del = 0.05
Del/Del = 0.00
Ins/Ins = 0.91
Ins/Del = 0.09
Del/Del = 0.00
χ2 = 0.26;
P = 0.60;
P* = 0.15
P* = 0.06 12
GFPT2
C>T
C = 0.78
T = 0.22
C = 0.72
T = 0.28
CC = 0.50
CT = 0.45
TT = 0.05
CC = 0.60
CT = 0.37
TT = 0.03
χ2 = 3.92;
P = 0.047;
P* = 0.03
OR = 1.38, 95% CI = (1.02<OR<1.98)
χ2 = 4.5;
P = 0.11;
P* = 0.04
51
PAI-1 4G/5G (del/ins) 4G = 0.52
5G = 0.48
4G = 0.49
5G = 0.51
4G4G = 0.23
4G5G = 0.52
5G5G = 0.25
4G4G = 0.29
4G5G = 0.46
5G5G = 0.25
χ2 = 0.84;
P = 0.36;
P* = 0.06
χ2 = 2.5;
P* = 0.29
14

P:P value for Pearson's chi-square test

P*: Fisher's exact P value.