Table 1. Oligonucleotides used for PAX6 amplification.
Exon | Sequences (5′-3′) | Annealing temperature (°C) |
---|---|---|
4 |
F:TGATGCAGCTGCCCGAGGATTA |
68 |
|
R:GGGGCGAGAGGGGGTGTGAGTTA |
|
5 |
F:TTCCCCTTCCTCCTCTCCTTTCT |
62.4 |
|
R:GGGGGTCCATAATTAGCATCGTT |
|
6 |
F:GCAAGGTCAGCACAAAAATAAAT |
66.5 |
|
R:TGCCCTGGGTCTGATGGA |
|
7 |
F:AAAACGTAAGCTTGTCATTGT |
58 |
|
R:GAGAGGGTGGGAGGAGGTA |
|
8 |
F:TTCCATGCCCAAAGTGATAG |
60 |
|
R:TTCCCAGGCCAACAAAAT |
|
9 |
F:AAAATGGTGGTCAGGTAACTAAC |
62.4 |
|
R:TGAAAAGATGCCCAGAGAAATAA |
|
10 |
F:TTGGTTGGAGGTAATGGGAGTG |
62.4 |
|
R:GGAAATCAGGTGGGACAGGTTAG |
|
11 |
F:CGTGGGGAGGGCAGCAGTG |
68 |
|
R:ATGGAGCCAGATGTGAAGGAGGAA |
|
12 |
F:GAAGGGCCAAATGGAGAAGAGA |
68 |
|
R:TGCAGACACAGCCAATGAGGT |
|
13 |
F:GACTAGCTCGAGGCCCAATCTTA |
64.8 |
|
R:TTCCCTTTTCAATCCCCATCC |
|
14 |
F:TTGCTGGAAATAAAAAGTGA |
58.9 |
|
R:CGGCTCTAACAGCCATTTTT |
|
H-SSCP analysis of exon 5. |
F:TTCTCCCTCATCTTCCTCTTCCTT |
64.8 |
R:GCAGTGGCCGCCCGTTGAC |
A sequence of oligonucleotides and annealing temperatures was used for exon-by-exon PAX6 amplification. In the table, “F” indicates the forward strand and “R” indicates the reverse strand. Sequences are given in the 5′-3′ direction.