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. 2010 Apr 15;16:676–681.

Table 1. Oligonucleotides used for PAX6 amplification.

Exon Sequences (5′-3′) Annealing temperature (°C)
4
F:TGATGCAGCTGCCCGAGGATTA
68
 
R:GGGGCGAGAGGGGGTGTGAGTTA
 
5
F:TTCCCCTTCCTCCTCTCCTTTCT
62.4
 
R:GGGGGTCCATAATTAGCATCGTT
 
6
F:GCAAGGTCAGCACAAAAATAAAT
66.5
 
R:TGCCCTGGGTCTGATGGA
 
7
F:AAAACGTAAGCTTGTCATTGT
58
 
R:GAGAGGGTGGGAGGAGGTA
 
8
F:TTCCATGCCCAAAGTGATAG
60
 
R:TTCCCAGGCCAACAAAAT
 
9
F:AAAATGGTGGTCAGGTAACTAAC
62.4
 
R:TGAAAAGATGCCCAGAGAAATAA
 
10
F:TTGGTTGGAGGTAATGGGAGTG
62.4
 
R:GGAAATCAGGTGGGACAGGTTAG
 
11
F:CGTGGGGAGGGCAGCAGTG
68
 
R:ATGGAGCCAGATGTGAAGGAGGAA
 
12
F:GAAGGGCCAAATGGAGAAGAGA
68
 
R:TGCAGACACAGCCAATGAGGT
 
13
F:GACTAGCTCGAGGCCCAATCTTA
64.8
 
R:TTCCCTTTTCAATCCCCATCC
 
14
F:TTGCTGGAAATAAAAAGTGA
58.9
 
R:CGGCTCTAACAGCCATTTTT
 
H-SSCP analysis of exon 5.
F:TTCTCCCTCATCTTCCTCTTCCTT
64.8
  R:GCAGTGGCCGCCCGTTGAC  

A sequence of oligonucleotides and annealing temperatures was used for exon-by-exon PAX6 amplification. In the table, “F” indicates the forward strand and “R” indicates the reverse strand. Sequences are given in the 5′-3′ direction.