. Author manuscript; available in PMC: 2011 Mar 15.

Published in final edited form as: J Immunol. 2010 Feb 17;184(6):2908–2917. doi: 10.4049/jimmunol.0903453

TABLE II. Probe sequences used in EMSA experiments.

Gene Symbol	Specific TRANSFAC matrix	TF / target site	Probe sequence (5′ – 3′)
ISG15 (control)^*		ISRE	GATCGGAAAGGGAAACCGAAACTGAAGCC
ALX1^*	V$IRF7_01	IRF7	AGTTCTAATGAATATGAAAATAGGCGGGCG
PLA1A^*	V$CART1_01	ALX1	GAGGCTAGTTAATGATTAGTGAAATCCACG
IFNA5	V$CART1_01	ALX1	ATTAAAATTTAATGGGATTTTTAGTTAGAA
IFNA7	V$CART1_01	ALX1	TGAACATACTAATTTCCATTTTCTAAATGC
FOXC1	V$STAT1_01	STAT1	GGGCTCCGCTGCCCGGAAAAAAGTGTAACT
IFNA14^*	V$FREAC3_01	FOXC1	GTGCATAGGTCTTAAATAAGGAACATAC
CREM	V$FREAC3_01	FOXC1	CAAATGGCTCAGCAAATAAAAATGTTAA
CXCL9	V$FREAC3_01	FOXC1	GAAATGAATATCCTAAATAAATATGATCCC
PELI1	V$FREAC3_01	FOXC1	CCTTATTAAACTGCAAATAAAATGCTGTGA
RUNX3	V$CREB_Q4_01	CREM	CACCTGGGCCGTGATGTCACGGCCTTTTA
RUNX3^*	V$AML_Q6	RUNX3	CACCTGGGCCGTGATGTCACGGCCTTTTA
CCL3	V$AML_Q6	RUNX3	TATCCTGAGCCCCTGTGGTCACCAGGGACC

Validated by EMSA