Table 2.
Sequence 5′–3′ | Specificity | |
---|---|---|
18S primersa | ||
ChattR | GCTGACGGAGTCGTTGAG | Group (Raphidophyte) specific |
4617F | TCCTGCCAGTAGTCATATGC | Eukaryotic general |
35F | GTCTCAAAGATTAAGCCATGC | Eukaryotic general |
128F/R | TACTGTGAAACTGCGAATGGCTC | Eukaryotic general |
516F/R | CACATCTAAGGAAGGCAGCA | Eukaryotic general |
683F/R | TTGGAGGGCAAGTCTGGTGCC | Eukaryotic general |
1072F | GGGATAGTTGGGGGTATTCGTATT | Eukaryotic general |
1416R | TTCAGCCTTGCGACCATACTC | Eukaryotic general |
1590F | AACGAGACCCCCGCCTGCTAA | Eukaryotic general |
1815F/R | GGAAGTTGGGGGCAATAACAGG | Eukaryotic general |
4618Rb | TGATCCTTCTGCAGGTTCACCTAC | Eukaryotic general |
ITS1-5.8S-ITS2 primersa | ||
4618F | GTAGGTGAACCTGCAGAAGGATCA | Eukaryotic general |
ITSF/R | ATGTCTTGGTTCCCACAACGATG | Semi-eukaryotic specific |
LSU1R | ATATGCTTAAATTCAGCGGGT | Eukaryotic general |
16S primersa,c | ||
880F/R | ATAACTGACACTCAGAGACGACA | Plastid specific |
1809R | CAGTACGGCTACCTTGTTACGA | Prokaryotic general |
F (forward) and R (reverse) correspond to the direction of the primer.
Additional primers were utilized to generate the plastid sequence for F. japonica CCMP 1661 (Tengs et al. 2000).