TABLE 2.
Analysis of the expression level of genes of interest
The expression level of genes of interest was determined in WT and Δpim1 cells by quantitative PCR experiments, as described under “Experimental Procedures.” For each gene, relative expression (Δpim1/WT) was determined by calculating the ratio between the expression level from Δpim1 and WT. Sequences of primers used are depicted: the first is the forward primer, and the second is the reverse primer.
| Genes | Primers (5′–3′) | Expression level in WT | Expression level in Δpim1 | Relative expression Δpim1/WT |
|---|---|---|---|---|
| HSP78 | CGACGGTAAATTAGACCCTGTC | 0.84 ± 0.07 | 1.54 ± 0.22 | 1.83 |
| ATTTGAATAGCTCTTGCGATTTCT | ||||
| HSP60 | GAAGTTGCCTCCAAAACCAA | 0.89 ± 0.05 | 2.15 ± 0.18 | 2.41 |
| TGGCTCTACCTAAGACAGTAGCAG | ||||
| SOD2 | AAACCACTGTCTATTCTGGGAAA | 0.90 ± 0.19 | 1.34 ± 0.06 | 1.49 |
| CTCGTCGATTGCCTTTGC | ||||
| PDB1 | ATACGGGTTCACAGGTTTGG | 0.88 ± 0.05 | 0.74 ± 0.04 | 0.84 |
| GCTTGCATAGAGAAATTGAACG | ||||
| LAT1 | AAAGACCAGTACGAAGGCTCAG | 0.88 ± 0.05 | 0.76 ± 0.08 | 0.86 |
| GCTGGCGCTTCTTGTTTCT | ||||
| LPD1 | TTCGTTAAAGGAAATTCCCAAA | 0.86 ± 0.53 | 0.68 ± 0.05 | 0.79 |
| ACCCATTTCCAATCCGATG | ||||
| COQ5 | TTACGCAAGCTCACAGAGCA | 1.39 ± 0.244 | 1.17 ± 0.17 | 0.84 |
| GCTGCGGATGATAAAGGACT | ||||
| DLD1 | TATTTGAGCGACCACGGTTT | 0.73 ± 0.04 | 0.48 ± 0.05 | 0.66 |
| AACCACCAATCTGTGCACCT | ||||
| ALD4 | CGGGTACGGTCTGGATAAAC | 1.36 ± 0.29 | 1.74 ± 0.22 | 1.28 |
| AACCCACCGAAAGGAACTG | ||||
| ILV5 | GCCATTGTTGACCAAGGGTA | 0.73 ± 0.16 | 0.64 ± 0.10 | 0.88 |
| TCCTTGAAGACTGGGGAGAA | ||||
| QCR2 | GCGGCCTATTTACTCTGTTTGT | 0.97 ± 0.17 | 1.17 ± 0.13 | 1.21 |
| CCGCAACAATTTTCTTGATGT | ||||
| RIP1 | TGTGTTCCAATTGGTGAAGC | 0.85 ± 0.31 | 1.35 ± 0.30 | 1.59 |
| TGAACCATGGCAAGGACAG | ||||
| ATP1 | CTCCTGGTCGTGAAGCCTAC | 1.17 ± 0.25 | 1.17 ± 0.04 | 1.00 |
| GCGGCTCTTTCTAGCAATCTT | ||||
| ATP2 | TCCGTGGTGAAAAGGTTCTT | 0.93 ± 0.05 | 0.90 ± 0.02 | 0.97 |
| TCCCTAAAGTTTCTCTCCCAACT | ||||
| MRP20 | GCCAGAGCAGGTTCCAATAA | 1.25 ± 0.27 | 0.56 ± 0.43 | 0.45 |
| GCCGCTTTTGTCGAGTATTT |