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. 2010 Feb 11;285(15):11445–11457. doi: 10.1074/jbc.M109.065425

TABLE 2.

Analysis of the expression level of genes of interest

The expression level of genes of interest was determined in WT and Δpim1 cells by quantitative PCR experiments, as described under “Experimental Procedures.” For each gene, relative expression (Δpim1/WT) was determined by calculating the ratio between the expression level from Δpim1 and WT. Sequences of primers used are depicted: the first is the forward primer, and the second is the reverse primer.

Genes Primers (5′–3′) Expression level in WT Expression level in Δpim1 Relative expression Δpim1/WT
HSP78 CGACGGTAAATTAGACCCTGTC 0.84 ± 0.07 1.54 ± 0.22 1.83
ATTTGAATAGCTCTTGCGATTTCT
HSP60 GAAGTTGCCTCCAAAACCAA 0.89 ± 0.05 2.15 ± 0.18 2.41
TGGCTCTACCTAAGACAGTAGCAG
SOD2 AAACCACTGTCTATTCTGGGAAA 0.90 ± 0.19 1.34 ± 0.06 1.49
CTCGTCGATTGCCTTTGC
PDB1 ATACGGGTTCACAGGTTTGG 0.88 ± 0.05 0.74 ± 0.04 0.84
GCTTGCATAGAGAAATTGAACG
LAT1 AAAGACCAGTACGAAGGCTCAG 0.88 ± 0.05 0.76 ± 0.08 0.86
GCTGGCGCTTCTTGTTTCT
LPD1 TTCGTTAAAGGAAATTCCCAAA 0.86 ± 0.53 0.68 ± 0.05 0.79
ACCCATTTCCAATCCGATG
COQ5 TTACGCAAGCTCACAGAGCA 1.39 ± 0.244 1.17 ± 0.17 0.84
GCTGCGGATGATAAAGGACT
DLD1 TATTTGAGCGACCACGGTTT 0.73 ± 0.04 0.48 ± 0.05 0.66
AACCACCAATCTGTGCACCT
ALD4 CGGGTACGGTCTGGATAAAC 1.36 ± 0.29 1.74 ± 0.22 1.28
AACCCACCGAAAGGAACTG
ILV5 GCCATTGTTGACCAAGGGTA 0.73 ± 0.16 0.64 ± 0.10 0.88
TCCTTGAAGACTGGGGAGAA
QCR2 GCGGCCTATTTACTCTGTTTGT 0.97 ± 0.17 1.17 ± 0.13 1.21
CCGCAACAATTTTCTTGATGT
RIP1 TGTGTTCCAATTGGTGAAGC 0.85 ± 0.31 1.35 ± 0.30 1.59
TGAACCATGGCAAGGACAG
ATP1 CTCCTGGTCGTGAAGCCTAC 1.17 ± 0.25 1.17 ± 0.04 1.00
GCGGCTCTTTCTAGCAATCTT
ATP2 TCCGTGGTGAAAAGGTTCTT 0.93 ± 0.05 0.90 ± 0.02 0.97
TCCCTAAAGTTTCTCTCCCAACT
MRP20 GCCAGAGCAGGTTCCAATAA 1.25 ± 0.27 0.56 ± 0.43 0.45
GCCGCTTTTGTCGAGTATTT