Table 1.
Name | bp | Sequence |
---|---|---|
8-oxodG | 30 | 5′-ATA TAC CGC G8C CGG CCG ATC AAG CTT ATT |
3′-TAT ATG GCG CCG GCC GGC TAG TTC GAA TAA | ||
dUracil | 30 | 5′-ATA TAC CGC GUC CGG CCG ATC AAG CTT ATT |
3′-TAT ATG GCG CGG GCC GGC TAG TTC GAA TAA | ||
5-OHdU | 30 | 5′-ATA TAC CGC G5C CGG CCG ATC AAG CTT ATT |
3′-TAT ATG GCG CGG GCC GGC TAG TTC GAA TAA | ||
5-OHdU bubble | 51 | 5′-GCT TAG CTT GGA ATC GTA TCA TGT A5A CTC GTG TGC CGT GTA GAC CGT GCC |
3′-CGA ATC GAA CCT TAG CAT AGG CAC CCG ACA AAC ACG GCA CAT CTG GCA CGG | ||
AP | 30 | 5′-ATA TAC CGC GGF CGG CCG ATC AAG CTT ATT |
3′-TAT ATG GCG CCG GCC GGC TAG TTC GAA TAA |
The modified bases are shown in bold letters. Underlined bases indicate unpaired area. bp: base pairs. (8) 8-oxodG; (U) dU; (5) 5-OHdU; (F) tetrahy-drofuran.