Table 2.
amino acid | postulated catalytic role(s)b | substitution | Km (μM S-HPC) | kcat (s-1) | kcat/Km (M-1 s-1) |
---|---|---|---|---|---|
none | 31 ± 0.9 | 25 ± 0.2 | 7.5 × 105 | ||
S143 | H-bond donor to substrate/charge stabilization of the transition state | S143A | 9500 ± 2500 | 0.013 ± 0.001 | 1.4 × 100 |
Y156 | general acid/base | Y156A | 1800 ± 200 | 0.65 ± 0.02 | 3.5 × 102 |
Y156F | no activityc | ||||
K160 | lowers pKa of Y156/coenzyme binding | K160A | no activityc |
Assays contained 66 μg of S143A or 20 μg of Y156A, 5 mM NAD+ and variable concentration of S-HPC.
Postulated catalytic roles are based on a general trend found in most SDR enzymes (including R-HPCDH).
No activity was defined as no measurable change in the absorbance at 340 nm (for NADH) in assays containing 100 μg protein, 2.5 mM S-HPC and 20 mM NAD+. Apparent kcat and Km values are reported as means ± standard errors. All other values are reported as means only. All assays were performed in triplicate at 30 °C with fixed concentrations of NAD+. Apparent kinetic constants were determined by fitting experimental data to the standard form of the Michaelis-Menten equation.