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. Author manuscript; available in PMC: 2011 May 7.
Published in final edited form as: Org Biomol Chem. 2010 Mar 4;8(9):2028–2036. doi: 10.1039/b923465a

Table 2.

Hybridization data for Invader LNA probes and their free energy, ΔGrec293, for recognition of dsDNA target ON1:ON2 at 293 K.a

Entry ON Duplex Tm
Tm]
(°C)
ΔH[ΔΔH]
(kJ/mol)
(T293ΔS)[Δ(T293ΔS)]
(kJ/mol)
ΔG293[ΔΔG293]
(kJ/mol)
ΔGrec293
(kJ/mol)
1 ON3 5’-d(GGX ATA TAT AGG C) 36.5 −262 −214 −48 −26
ON7 3’-d(CCA XAT ATA TCC G) [−1.0] [+120] [+111] [+9]
2 ON4 5’-d(GGT AXA TAT AGG C) 41.0 −360 −301 −60 −19
ON8 3’-d(CCA TAX ATA TCC G) [+3.5] [+22] [+24] [−3]
3 ON5 5’-d(GGT ATA XAT AGG C) 40.5 −375 −315 −60 −22
ON9 3’-d(CCA TAT AXA TCC G) [+3.0] [+7] [+10] [−3]
4 ON6 5’-d(GGT ATA TAX AGG C) 36.0 −311 −260 −51 −24
ON10 3’-d(CCA TAT ATA XCC G) [−1.5] [+71] [+65] [+6]
5 ON11 5’-d(GGX AXA TAT AGG C) 48.0 −219 −165 −55 −34
ON14 3’-d(CCA XAX ATA TCC G) [+10.5] [+163] [+160] [+2]
6 ON12 5’-d(GGX ATA XAT AGG C) 53.0 −209 −152 −56 −47
ON15 3’-d(CCA XAT AXA TCC G) [+15.5] [+173] [+173] [+1]
7 ON13 5’-d(GGX ATA TAX AGG C) 48.0 −230 −175 −55 −50
ON16 3’-d(CCA XAT ATA XCC G) [+10.5] [+152] [+150] [+2]
a

Conditions as specified in Table 1.