Table 1. BLASTN search results of de novo assembly contigs against database of Influenza virus sequences.
Euler-SR_contigs | Contig length (bp) | Virus segment | Top hit of accession number using BLASTN search against databse of Influenza virus sequences | Length of subject (bp) | Identities | Contig location for A/Toronto/T0106/2009(H1N1) |
>826 183 2835 | 183 | 1 | gb|GQ328865|INFLUENZA A virus (A/Finland/553/2009(H1N1)) segment 1 polymerase PB2 (PB2) | 2345 | 167/168 (99%) | 5–168 |
>324 1558 136 | 1558 | 1 | gb|GQ365425|INFLUENZA A virus (A/Fukushima/1/2009(H1N1)) segment 1 polymerase PB2 (PB2) | 2280 | 1556/1558 (99%) | 201–1758 |
>1194 239 112 | 239 | 1 | gb|GQ894926|INFLUENZA A virus (A/Delaware/03/2009(H1N1)) segment 1 polymerase PB2 (PB2) | 2280 | 214/214 (100%) | 1894–2107 |
>887 174 3294 | 174 | 1 | gb|GQ894833|INFLUENZA A virus (A/Rhode Island/08/2009(H1N1)) segment 1 polymerase PB2 (PB2) | 2280 | 156/156 (100%) | 2145–2300 |
>890 2204 4651 | 2204 | 2 | gb|GQ894924|INFLUENZA A virus (A/New Mexico/04/2009(H1N1)) segment 2 polymerase PB1 (PB1) | 2274 | 2200/2204 (99%) | 41–2244 |
>696 2198 3968 | 2198 | 3 | gb|GQ866924|INFLUENZA A virus (A/Thailand/CU-H106/2009(H1N1)) segment 3 polymerase PA (PA) | 2238 | 2152/2155 (99%) | 54–2208 |
>868 1761 3831 | 1761 | 4 | gb|CY045503|INFLUENZA A virus (A/Bayern/66/2009(H1N1)) segment 4 sequence | 1754 | 1750/1754 (99%) | 1–1741 |
>897 1514 1710 | 1514 | 5 | gb|GQ502907|INFLUENZA A virus (A/Toronto/R8557/2009(H1N1)) segment 5 nucleocapsid protein | 1558 | 1511/1514 (99%) | 36–1549 |
>224 101 9 | 101 | 6 | gb|GQ502908|INFLUENZA A virus (A/Toronto/R8557/2009(H1N1)) segment 6 neuraminidase (NA) | 1458 | 101/101 (100%) | 3–103 |
>1206 1302 2468 | 1302 | 6 | gb|GQ906584|INFLUENZA A virus (A/Stockholm/49/2009(H1N1)) segment 6 neuraminidase (NA) | 1447 | 1299/1300 (99%) | 124–1423 |
>750 1019 1128 | 1019 | 7 | gb|CY045957|INFLUENZA A virus (A/Toronto/T0106/2009(H1N1)) segment 7 sequence | 1026 | 1017/1017 (100%) | 9–1025 |
>809 834 4399 | 834 | 8 | gb|GQ485660|INFLUENZA A virus (A/Ekaterinburg/01/2009(H1N1)) segment 8 nuclear export | 877 | 828/830 (99%) | 52–881 |
Schematic representation of contigs is shown in Fig. 2.