. Author manuscript; available in PMC: 2010 Apr 25.

Published in final edited form as: Mol Psychiatry. 2008 Jul 29;14(1):18–29. doi: 10.1038/mp.2008.88

Table 2.

Comparison of DTNBP1 high-risk haplotype in the Irish study and the HapMap samples

	1	2	3	4	5	6	7	8	Frequency
									ISHDSF	CEU	JPT+CHB	YRI
Marmost	A	T	G	C	G	A	G	G
Rhesus	.	C	.	G	A	.	.	.
Orangutan	.	C	.	.	.	.	.	.
Chimp	.	C	.	A	.	.	.	A
1	.	C	T	.	.	G	.	A	0.733	0.750	0.705	0.633
2	G	C	.	T	A	.	.	.	0.058	0.108	0.005	0.025
3	.	C	T	.	.	G	A	A	0.071	0.058	0.211
4	.	C	T	T	.	G	.	A	0.010
5	G	.	.	T	A	.	.	A	0.060	0.075	0.072	0.308
6	G	C	T	T	.	G	A	.	0.015	0.008
Rare	G	.	.	T	A	.	A	.

Abbreviations: chimp, chimpanzee; rhesus, rhesus macaque; SNP, single nucleotide polymorphism. The SNPs from 1 to 8 are, respectively, rs1474605 (P1792), rs1018381 (P1578), rs2619522 (P1763), rs760761 (P1320), rs2005976 (P1757), rs2619528 (P1765), rs1011313 (P1325) and rs3213207 (P1635). Haplotypes 1 and 2 are the common and high-risk haplotypes in the ISHDSF. Haplotype frequencies were based on the ISHDSF study⁷ and the HapMap data (CEU, JPT+CHB and YRI). The sum of the haplotype frequencies is less than 1 because some other haplotypes were not included.