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. 2010 Apr 27;5(4):e10207. doi: 10.1371/journal.pone.0010207

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Kumasaka et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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(a) The plot corresponds to the contingency table (Table 1) whose marginal genotype counts are shown by each circle with area which is proportional to the number of replicates, and each pairwise count of the two genotypes is shown by the width of a segment connecting two genotypes. (b) The column indicates the difference of the covariance and the row indicates different pair of allele frequencies . The greater the grade of the line crossings between two SNPs, the weaker the covariance between the SNPs. We also see that the steeper the slope between heterozygotes, the greater the allele frequency difference between A and B.

Inline graphic — (a) The plot corresponds to the contingency table (Table 1) whose marginal genotype counts are shown by each circle with area which is proportional to the number of replicates, and each pairwise count of the two genotypes is shown by the width of a segment connecting two genotypes. (b) The column indicates the difference of the covariance and the row indicates different pair of allele frequencies . The greater the grade of the line crossings between two SNPs, the weaker the covariance between the SNPs. We also see that the steeper the slope between heterozygotes, the greater the allele frequency difference between A and B.