Table 1. Simulated data for two SNP loci.

		SNP 2
		BB	Bb	bb
	AA	1,567	1,757	472	3,796
SNP 1	Aa	1,091	2,583	1,065	4,739
	aa	210	696	568	1,465
		2,859	5,036	2,105	10,000

Genotype counts for two SNP loci were simulated under HWE with fixed haplotype frequencies .