TABLE 1. Summary OF ChIP-chip findings in PCDHαβγ locus.
Summary of ChIP-chip peaks shown in supplemental figure 1 and supplemental figure 2 for H3K9/14Ac and H3K4me1 immunoprecipitates. Map distances on chromosome 5 are from NCBI build 36.1, hg18.
H3K9/14 Ac Peaks | H3K4me1 Peaks | Notes |
---|---|---|
1. 140,286,433–140,287,582 | 1. 140,287,298–140,287,602 | PCDHαC1 promoter (TSS 140,286,486) |
2. 140,326,988–140,327,157 | 2. 140,326,798–140,328,277 | PCDHαC2 promoter (TSS 140,326,296) |
3. 140,361,419–140,362,779 | 3. 140,361,319–140,362,458 | corresponds to HS 7 |
4. 140,400,198–140,400,868 | 4. 140,399,758–140,400,086 | corresponds to HS 5-1 |
5. 140,680,813–140,681,002 | 5. 140,679,488–140,679,732 | TAF7 promoter (TSS 140,678,241) |
6. 140,686,031–140,686,385 | PCDHγA1 (TSS 140,690,436) | |
7. 140,836,076–140,838,601 | 6. 140,835,361–140,839,748 | PCDHγC3 (TSS 140,835,753) |
8. 140,844,072--40,845,334 | 7. 140,843,692–140,847,314 | PCDHγC4 (TSS 140,844,925) |
8. 140,848,685–140,851,154 | PCDHγC5 (TSS 140,848,992) and exon | |
9. 140,852,520–140,855,580 | 9. 140,853,196–140,856,220 | common constant region exon |
10. 140,868,194–140,869,553 | 10. 140,867,949–140,869,553 | ~1kb 5’ to PCDHγ constant region terminal exon |
11. 140,872,814–140,874,481 | 11. 140,872,879–140,874,516 | 3’ to PCDHγ locus |
12. 140,883,968–140,884,963 | 12. 140,884,193–140,884,922 | 3’ to PCDHγ locus, 5’ end of EST AK094264 |
13. 140,917,578–140,919,962 | EST BC041908 at 140,918,062; DIAPH1 intron |