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. 2010 Mar 19;153(1):14–33. doi: 10.1104/pp.110.154856

Table I. Genes investigated in this study with known or putative involvement in sugar signaling and Suc-to-starch conversion.

Protein Name Genea Barley1 Probe Set DEb Organc Foldd Reference
ADP-glucose pyrophosphorylase large subunit HvAPL1 Contig5267_at No U 1.37 Villand et al. (1992)
ADP-glucose pyrophosphorylase large subunit HvAPL2 Contig3390_at (1) U 1.83 Eimert et al. (1997)
ADP-glucose pyrophosphorylase small subunit HvAPS1a/b Contig2267_s_at No U 1.35 Thorbjornsen et al. (1996)
ADP-glucose pyrophosphorylase small subunit HvAPS2 No probe set U Johnson et al. (2003)
ADP-glucose transporter HvNST1 Contig7529_at (6) U 2.39 Patron et al. (2004)
α-Amylase 1 HvAMY1 Contig7088_at n.d. U Radchuk et al. (2009)
α-Amylase 2 HvAMY2 Contig3952_at n.d n.d. Radchuk et al. (2009)
α-Amylase 3 HvAMY3 Contig3953_s_at No n.d. 1.12 Radchuk et al. (2009)
α-Amylase 4 HvAMY4 EBma03_SQ002_M07_at No P 1.35 Radchuk et al. (2009)
α-Glucan phosphorylase HvPHO1 No probe set U Radchuk et al. (2009)
α-Glucan phosphorylase, cytosolic HvPHO2 Contig6517_at U 0.50 Radchuk et al. (2009)
β-Amylase 1 HvBAM1 Contig1406_at No U 1.41 Radchuk et al. (2009)
β-Amylase 2 HvBAM2 Contig1411_s_at No U 1.34 Radchuk et al. (2009)
β-Amylase 3 HvBAM3 Contig8246_at n.d. U Radchuk et al. (2009)
β-Amylase 4 HvBAM4 No probe set U Radchuk et al. (2009)
β-Amylase 5 HvBAM5 Contig11522_at (1) U 5.21 Radchuk et al. (2009)
β-Amylase 6 HvBAM6 No probe set U Radchuk et al. (2009)
β-Amylase 7 HvBAM7 No probe set U Radchuk et al. (2009)
β-Amylase 8 HvBAM8 Contig10917_at No U 1.38 Edner et al. (2007)
Cell wall invertase 1 HvCWINV1 Contig11241_at (3) U 2.28 Weschke et al. (2003)
Cell wall invertase 2 HvCWINV2 Contig6787_at No U 1.48 Weschke et al. (2003)
Disproportionating enzyme 1 HvDPE1 Contig26451_at No U 1.49 Radchuk et al. (2009)
Disproportionating enzyme 2 HvDPE2 Contig6654_at No U 1.48 Radchuk et al. (2009)
Ferredoxin-NADP reductase, putative FNR1-like baak21d06_s_at (4) U 1.96 Balmer et al. (2006)
Ferredoxin-thioredoxin reductase, putative FTR-like Contig14916_at No P 1.16 Balmer et al. (2006)
Fructan 1-exohydrolase Hv1-FEH Contig7811_s_at (3) U 2.21 Nagaraj et al. (2004)
Glucan, water dikinase 1 HvGWD1 Contig18313_at (4) U 2.08 Edner et al. (2007)
Glucan, water dikinase 2 HvGWD2 Contig14761_at n.d. U Edner et al. (2007)
Granule-bound starch synthase 1a HvGBSS1a Contig694_at No U 1.32 Patron et al. (2002)
Granule-bound starch synthase 1b HvGBSS1b Contig12208_at (4) U 1.80 Patron et al. (2002)
Hexokinase 1 HvHXK1 Contig12296_at (2) P 1.72 E. Mangelsen (unpublished data)
Hexokinase 2 HvHXK2 Contig17401_at No P 1.42 E. Mangelsen (unpublished data)
Hexokinase 3 HvHXK3 Contig14657_at No U 1.38 E. Mangelsen (unpublished data)
Hexokinase 5 HvHXK5 Contig4153_at No U 1.20 E. Mangelsen (unpublished data)
Isoamylase 1 HvISA1 Contig7560_at No P 1.11 Sun et al. (1999)
Isoamylase 2 HvISA2 Contig13547_at No E 1.24 Radchuk et al. (2009)
Isoamylase 3 HvISA3 Contig14990_at (6) U 1.38 Radchuk et al. (2009)
Limit dextrinase (pullulanase) HvLD Contig11648_at (3) U 1.86 Burton et al. (1999)
NADPH-dependent thioredoxin reductase 2 HvNTR2 HB22M22r_s_at No U 1.50 Shahpiri et al. (2008)
Phosphoglucan, water dikinase HvPWD No probe set U Kotting et al. (2005)
Plant glycogenin-like starch initiation protein 1 HvPGSIP1 rbags11k20_s_at No U 1.28 Chatterjee et al. (2004)
Plant glycogenin-like starch initiation protein 2 HvPGSIP2 Contig3977_at (3) U 4.01 Chatterjee et al. (2004)
SNF1-related protein kinase a HvSnRK1a Contig3529_at No E 1.33 Hannappel et al. (1995)
SNF1-related protein kinase b HvSnRK1b HVSMEc0011O22r2_at No U 1.54 Hannappel et al. (1995)
Starch-branching enzyme I HvSBEI No probe set U Sun et al. (1997)
Starch-branching enzyme IIa HvSBEIIa Contig3761_at No U 1.42 Sun et al. (1998)
Starch-branching enzyme IIb HvSBEIIb Contig3762_s_at (5) E Sun et al. (1998)
Starch synthase I HvSSI Contig1808_at No U 1.59 Li et al. (2003)
Starch synthase IIa HvSSIIa Contig20469_at No U 1.85 Li et al. (2003)
Starch synthase IIb HvSSIIb No probe set U Radchuk et al. (2009)
Starch synthase IIIa HvSSIIIa No probe set U Radchuk et al. (2009)
Starch synthase IIIb HvSSIIIb Contig10722_at (6) U 2.96 Radchuk et al. (2009)
Starch synthase IV HvSSIV Contig13138_at No U 1.26 Radchuk et al. (2009)
Sucrose synthase 1 HvSuSy1 Contig361_s_at No U 2.05 Guerin and Carbonero (1997)
Sucrose synthase 2 HvSuSy2 Contig823_at No U 1.40 Guerin and Carbonero (1997)
Sucrose transporter 1 HvSUT1 Contig4612_at No U 1.44 Weschke et al. (2000)
Sucrose transporter 2 HvSUT2 rbah43d09_s_at (3) U 1.66 Weschke et al. (2000)
Sucrose:fructan-6-fructosyltransferase Hv6-SFT Contig3392_at (4) U 2.64 Nagaraj et al. (2004)
Sucrose:sucrose-1-fructosyltransferase Hv1-SST Contig4521_s_at No U 1.41 Nagaraj et al. (2004)
Sugar transporter 1 HvSTP1 Contig3479_at (5) U 1.91 Weschke et al. (2003)
Sugar transporter 2 HvSTP2 No probe set U Weschke et al. (2003)
Sugar transporter 3 HvSTP3 Contig6135_s_at No U 1.26 Weschke et al. (2003)
Thioredoxin f Trx f-like Contig4022_at (6) U 4.06
Thioredoxin h1 HvTrx h1 Contig171_at No P 1.38 Maeda et al. (2003)
Thioredoxin h2 HvTrx h2 Contig2980_s_at No P 1.09 Maeda et al. (2003)
Thioredoxin h, putative Trx h-like HV06G09u_s_at (6) P 1.63 Maeda et al. (2003)
Thioredoxin m, putative Trx m-like Contig26351_at (3) E 2.09 Balmer et al. (2006)
Thioredoxin-like 1 Trx-like 1 Contig5236_at (6) U 2.15 Balmer et al. (2006)
Trehalose-6-phosphate phosphatase, putative TPP-like HS16E24u_s_at (3) U 2.81 Ramon et al. (2009)
Trehalose-6-phosphate synthase, putative TPS-like Contig3373_s_at (6) U 2.14 Ramon et al. (2009)
WRKY transcription factor 34 HvWRKY34 Contig10471_at No U 1.61 Mangelsen et al. (2008)
WRKY transcription factor 41 HvWRKY41 Contig12033_at (3) U 1.78 Mangelsen et al. (2008)
WRKY transcription factor SUSIBA2 HvWRKY46 Contig7243_at No U 1.10 Sun et al. (2003)
a

Previously annotated barley genes carry the prefix “Hv”; gene annotations based on best BLAST matches in Arabidopsis or rice (Oryza sativa) carry the suffix “-like.”

b

DE according to the calculation of 2,091 DE probe sets. Number of the set is given in parentheses. n.d., No signal detected.

c

Presence of transcript according to Sreenivasulu et al. (2008). E, Endosperm; n.d., no signal detected; P, pericarp; U, unspecific.

d

Amplitude of the diurnal fluctuation of gene expression given as the ratio of the median normalized maximum signal intensity to the median normalized minimum signal intensity.