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. Author manuscript; available in PMC: 2010 May 3.
Published in final edited form as: AIDS. 2009 Jul 31;23(12):1461–1471. doi: 10.1097/QAD.0b013e32832caf28

Fig. 2. Primary human DNA sequences at sites of integration.

Fig. 2

(a) Examples of sequences recovered from resting and activated cells. HIV long terminal repeat (LTR) sequence is shown in green with 25 bp of human genomic sequence in black. The viral-host DNA junction is marked by an arrow. (b) Information content at aligned integration target sites from activated and resting integration site data sets. The Y-axis indicates base conservation, with perfect conservation equaling two bits and no conservation equal to zero. The X-axis shows nucleotide positions relative to the integration site (10 bases on each side with the point of integration between positions –1 and 0).