Table 3.

Permutation test ranking of the surface registration methods (Test 2 with FS40 data). This table is constructed in the same manner as Table 2, but ranks surface overlap values (left) and modified Hausdorff distances (right) between surface-warped source labels and their corresponding target labels, again averaged across labeled regions, but using the FS40 data. The volume registration methods are not included in this table because for Test 2 (S-S), these methods underwent a double resampling to register surface labels as volumes and evaluate them as surfaces (see text and Supplementary Table 2).

	Surface overlap test	Hausdorff distance test
Rank 1	FreeSurfer with templates	FreeSurfer with templates
Rank 2	Spherical Demons with templates	Spherical Demons with templates