TABLE 1.
Comparison of results of HRM assay with pyrosequencing and itraconazole susceptibilities of reference A. fumigatus strainsa
| Strain | 54th codon of cyp51A | Amino acid | HRM genotype | HRM confidence (%) | Pyrosequence | Itraconazolec MIC (μg/ml) |
|---|---|---|---|---|---|---|
| H11-20b | GGG | Gly | GGG | 100 | GGG | 0.5 |
| Af41 | GGG | Gly | GGG | 98.27 | GGG | 0.25 |
| RIT12 | GAG | Glu | Variation | 51.58 | GAG | >16 |
| Af72 | GAG | Glu | Variation | 69.66 | GAG | >16 |
| RIT18 | GAA | Glu | Variation | 24.08 | GAA | >16 |
| RIT32 | GAA | Glu | Variation | 19.82 | GAA | >16 |
| RIT15 | AAG | Lys | Variation | 8.24 | AAG | >16 |
| RIT38 | AAG | Lys | Variation | 8.11 | AAG | >16 |
| RIT41 | AGG | Arg | Variation | 53.22 | AGG | >16 |
| RIT51 | AGG | Arg | Variation | 50.59 | AGG | >16 |
| SO/3827A | GTG | Val | Variation | 65.0 | GTG | >16 |
| SO/3829 | GTG | Val | Variation | 75.98 | GTG | >16 |
| R7-1 | TGG | Trp | Variation | 41.11 | TGG | >16 |
Characterized strains including itraconazole MIC data were obtained from Balashov et al. (1).
Used as GGG (wild-type) control for HRM assay. The HRM data of all other strains were compared to those of this wild-type control for identification as GGG (wild type) at ≥90% confidence or as a variation (mutant) if <90% confidence.