TABLE 2.
Slippery-site SARS-CoV sequencesa
Slippery-site sequence | % −1 PRF | SD | Plaque size | TCID50 |
---|---|---|---|---|
U UUA AAC (WT) | 14.40 | 2.35 | +++ | 4.53 |
U UUU UUC | 12.24 | 2.41 | ||
A AAT TTA | 4.93 | 1.56 | ||
U UUU UUU* | 4.88 | 1.31 | ++ | <1 |
A AAA AAC | 4.40 | 1.02 | ||
G GGA AAC | 3.97 | 0.70 | ||
G GGU UUA | 3.57 | 0.74 | ||
U UUA AAU | 3.23 | 1.48 | ||
U UUA AAA | 2.81 | 0.82 | ||
A AAA AAU* | 2.33 | 0.55 | + | <1 |
C CCA AAC | 2.21 | 0.81 | ||
G GGU UUC | 1.94 | 0.83 | ||
U UUA AAG | 1.72 | 1.24 | ||
G GGU UUU | 1.67 | 0.67 | ||
U UUG AAA | 0.70 | 0.19 | ||
G GGU UUG | 0.58 | 0.13 | ||
U UUG AAC* | 0.15 | 0.03 | − | ND |
Slippery-site SARS-CoV sequence mutants and incoming reading frames are indicated by spaces. *, slippery sites incorporated into infectious clones. −1 PRF efficiencies and standard deviations were measured in Vero cells as previously described (60). The plaque sizes of infectious clones are indicated by the number of plus signs. The TCID50 (log10/10 viral genomes) is the average of six measurements. The lower limit of the assay (1 log10) is 1.