TABLE 3.
Genotypes obtained for the eight species-specific SNPs typed for the 56 MTBC strains
| MTBC species (n = 56) | Nucleotide at SNP: |
PGGa | |||||||
|---|---|---|---|---|---|---|---|---|---|
| hsp65631 | katG463 | gyrA95 | katG203 | 16S rRNA1249 | gyrB(675) | gyrB(756) | gyrB(1410) | ||
| M. canettii (n = 1) | T | T | C | T | C | G | C | 1b | |
| M. tuberculosis (n = 7) and M. africanum (n = 1) | C | T | C | C | T | C | G | C | 1b |
| M. tuberculosis (n = 23) | C | G | C | C | T | C | G | C | 2 |
| M. tuberculosis (n = 6 including H37Rv) | C | G | G | C | T | C | G | C | 3 |
| M. africanum (n = 3) | C | T | C | T | T | C | G | C | 1a |
| M. pinnipedii (n = 1) | C | T | C | T | C | C | G | C | 1a |
| M. microti (n = 1) | C | T | C | T | T | T | G | C | 1a |
| M. caprae (n = 1) | C | T | C | T | T | C | A | C | 1a |
| M. bovis (n = 7) and M. bovis BCG (n = 5) | C | T | C | T | T | C | A | T | 1a |