Table 3.
Analysis of 3'UTR regulatory sequences
| 3'UTR motif | gene # | ER | NC | p-value |
|---|---|---|---|---|
| (A) | ||||
| m57 | 110 | 1.04 | 0.39 | 0.0037 |
| m11 | 623 | 0.98 | -0.23 | 0.0026 |
| m43 | 254 | 0.96 | -0.33 | 0.0009 |
| o7 | 207 | 0.96 | -0.33 | 0.0058 |
| (B) | ||||
| m53 | 42 | 1.30 | 2.60 | 0.0076 |
| o34 | 75 | 1.13 | 1.22 | 0.0006 |
| m35 | 54 | 1.13 | 1.18 | 0.0026 |
| m103 | 41 | 1.11 | 1.05 | 0.0048 |
| m33 | 119 | 1.11 | 1.04 | 0.0026 |
| m95 | 56 | 1.11 | 1.03 | 0.0004 |
| m16 | 213 | 1.10 | 0.99 | 0.0000 |
| o25 | 105 | 1.09 | 0.86 | 0.0011 |
| m85 | 82 | 1.09 | 0.84 | 0.0043 |
| m2/ARE | 675 | 1.09 | 0.82 | 0.0000 |
| m67 | 164 | 1.07 | 0.68 | 0.0004 |
| o18 | 278 | 1.07 | 0.65 | 0.0001 |
| m50 | 108 | 1.07 | 0.64 | 0.0081 |
| m100 | 70 | 1.06 | 0.60 | 0.0079 |
| o43 | 142 | 1.05 | 0.49 | 0.0021 |
| m30 | 85 | 1.05 | 0.49 | 0.0133 |
| m70 | 136 | 1.05 | 0.48 | 0.0108 |
| o12 | 196 | 1.05 | 0.48 | 0.0012 |
| m24 | 332 | 1.05 | 0.47 | 0.0001 |
| o15 | 253 | 1.04 | 0.43 | 0.0011 |
| m3 | 481 | 1.04 | 0.43 | 0.0000 |
| m20 | 262 | 1.04 | 0.40 | 0.0024 |
| o38 | 142 | 1.04 | 0.38 | 0.0063 |
| m29 | 232 | 1.04 | 0.37 | 0.0013 |
| m41 | 224 | 1.04 | 0.36 | 0.0025 |
| o32 | 155 | 1.04 | 0.36 | 0.0067 |
| m13 | 1015 | 1.03 | 0.30 | 0.0000 |
| m4 | 625 | 1.03 | 0.29 | 0.0000 |
| o21 | 363 | 1.03 | 0.26 | 0.0011 |
| m19 | 308 | 1.02 | 0.25 | 0.0028 |
| m9 | 942 | 1.02 | 0.24 | 0.0000 |
| m31 | 347 | 1.02 | 0.21 | 0.0018 |
| m25 | 488 | 1.02 | 0.21 | 0.0006 |
| m8 | 337 | 1.02 | 0.17 | 0.0077 |
| m26 | 383 | 1.02 | 0.15 | 0.0017 |
| m5 | 1175 | 1.01 | 0.06 | 0.0000 |
| m1/poly-A | 1938 | 0.95 | -0.54 | 0.0091 |
| (C) | ||||
| m91 | 66 | 1.1 | 0.56 | 0.0046 |
| m13 | 1015 | 1.01 | 0.06 | 0.0016 |
| m9 | 942 | 1.01 | 0.06 | 0.0016 |
A total of 175 3'UTR motis were identified as described in Xie et al. [14]. The table shows the number of genes in each class of motif, approximate mean expression ratios (ER), mean normed coefficients (NC), and p-values from t-tests. (A) Basal differences between genotypes, (B) LPS induction in Wt, and (C) differences between genotypes in LPS induction (genotype by treatment interaction).