Table 2.
Assembly and Map statistics for the Yersinia genomes.
| 454 Contigs | Optical Map | |||||
|---|---|---|---|---|---|---|
| Strain | Coverage | Count (>10 Kbp) | N50 Size (Kbp) | Size (Mbp) | Fragments | N50 Size (Kbp) |
| Y. kristensenii | 29× | 488 (50) | 93 | AflII: 4.63 | 350 | 5.5 |
| Y. aldovae | 25× | 375 (83) | 86 | AflII: 4.30 | 360 | 11.4 |
| Y. mollaretii | 36× | 1637 (74) | 85 | AflII: 4.93 | 397 | 19.0 |
| NheI: 4.92 | 556 | 6.4 | ||||
| Y. fredriksenii | 29× | 1244 (46) | 150 | AflII: 5.34 | 467 | 24.7 |
| NheI: 5.39 | 611 | 3.6 | ||||
| Y. bercovieri | 26× | 1219 (84) | 59 | AflII: 4.54 | 415 | 2.6 |
| NheI: 4.50 | 591 | 13.9 | ||||
| Y. intermedia | 35× | 1242 (60) | 124 | AflII: 4.95 | 436 | 6.6 |
| NheI: 5.06 | 537 | 10.2 | ||||
| Y. rohdei | 22× | 281 (59) | 116 | AflII: 4.65 | 413 | 11.3 |
| NheI: 4.64 | 458 | 12.7 | ||||
| Y. ruckerii | 36× | 419 (63) | 79 | AflII: 3.90 | 142 | 29.6 |
| NheI: 3.95 | 457 | 7.9 | ||||
For the 454 contigs we report the average coverage of the contigs, the number of contigs (with large contigs in parentheses) and the N50 size. For the optical maps, we report the total size, number of fragments and N50 size of fragments for AflII and NheI based maps on seperate lines.