Table 1.
Summary of sRNAs sequences from WT and MT sweet orange
| Category | Distinct signatures | Total signatures | Mean frequencies | |||
|---|---|---|---|---|---|---|
| WT | MT | WT | MT | WT | MT | |
| matching protein-coding gene | ||||||
| sense | 13811 (6.80%) | 18142 (5.66%) | 244819 (13.67%) | 346569 (10.36%) | 17.73 | 19.10 |
| antisense | 8281 (4.08) | 10651 (3.32%) | 120749 (6.74%) | 162839 (4.87%) | 14.58 | 15.29 |
| non-protein-coding RNAs | ||||||
| snoRNA | 13 (0.01%) | 14 (0.01%) | 471 (0.03%) | 149 (0.01%) | 36.23 | 10.64 |
| snRNA | 39 (0.02%) | 104 (0.03%) | 261 (0.01%) | 859 (0.03%) | 6.69 | 8.26 |
| tRNA | 647 (0.32%) | 1301 (0.41%) | 21932 (1.22%) | 73778 (2.21%) | 33.90 | 56.71 |
| rRNA | 2747 (1.35%) | 3772 (1.18%) | 59535 (3.33%) | 99252 (2.97%) | 21.67 | 26.31 |
| miRNAs | ||||||
| known | 667 (0.33%) | 802 (0.25%) | 61993 (3.46%) | 87455 (2.61%) | 92.94 | 109.05 |
| novel | 83 (0.04%) | 111 (0.03%) | 4084 (0.23%) | 11463 (0.34%) | 49.20 | 103.27 |
| other sRNAs | 176677 (87.05%) | 285546 (89.11%) | 1276551 (71.30%) | 2563382 (76.62%) | 7.23 | 8.98 |
| total | 202965 (100%) | 320443 (100%) | 1790395 (100%) | 3345746 (100%) | 8.82 | 10.44 |