Table 2.
Potential novel miRNA genes from sweet orange
| miRNA ID | Sequences (5'-3') | WT counta | MT counta | Fold change | Precursor Unigene ID | Start, end | miRNA star |
|---|---|---|---|---|---|---|---|
| csi-novel-01 | UUUUUCGGCAACAUGAUUUCU | 2.8 | 0.0 | EY671768 | 607, 764 | Yes | |
| csi-novel-02 | UGGAGGCAGCGGUUCAUCGAUC | 4.5 | 3.3 | 1.4 | EY681703 | 286,417 | Yes |
| csi-novel-03 | UAGAUAAAGAUGAGAGAAAAA | 220.1 | 1248.5 | 5.7 | EY683731 | 19,166 | Yes |
| csi-novel-04 | UUCAAGAAAUCUGUGGGAAG | 8.9 | 0.0 | EY714194 | 255, 397 | Yes | |
| csi-novel-05 | UGAAGGGCCUUUCUAGAGCAC | 90.5 | 29.6 | 3.1 | CN182895 | 123, 285 | Yes |
| csi-novel-06 | UUCCCUAGUCCCCCUAUUCCUA | 11.2 | 1.5 | 7.5 | CX051199 | 168, 263 | Yes |
| csi-novel-07 | GGAAUGUUGUCUGGCUCGAGG | 12.3 | 4.8 | 2.6 | EY672989 | 141, 318 | Yes |
| csi-novel-08 | AGUGGGAGCGUGGGGUAAGAAG | 287.1 | 369.1 | 1.3 | EY676411 | 137, 282 | Yes |
| csi-novel-09 | UUGAGUUCUGCAAGCCGUCGA | 0.0 | 2.7 | EY712260 | 398, 498 | Yes | |
| csi-novel-10 | AGGUCAUCUUGCAGCUUCAAU | 27.9 | 4.5 | 6.2 | EY739655 | 272, 634 | Yes |
| csi-novel-11 | UGGACAGAGAAAUCACGGUCA | 591.5 | 132.7 | 4.5 | TC19570 | 105, 191 | Yes |
| csi-novel-12 | GCAGCGUCCUCAAGAUUCACA | 15.1 | 4.5 | 3.4 | TC23189 | 300, 444 | Yes |
a count was normalized as transcripts per million (TPM).