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. 2010 May 4;4(5):e671. doi: 10.1371/journal.pntd.0000671

Table 1. qRT-PCR primers and probes used for detection and quantification of CxFV Izabal RNA.

Target Primer name 5′ to 3′ sequence Tm Nucleotides different from CxFV from Japan (NC_008604) Nucleotides different from CFAV (NC_001564)
E E92F CGCCGAACGGACTTCTTG 59 0 4
E151R TCCATTGGCCGCCATATATC 59 0 4
E112Probe TTCCGCACTGGAGCAGCCG 70 2 8
E E232F GGTGAGATCAACGGCAAAGAA 59 2 7
E295R CAGTTCCCCATCCACGATTG 59 0 4
E295Probe CGTTTGCTCAACCCAGCCCT 68 1 4
NS5 NS5372F CCACACCAGTCTTCGGTACATC 58 2 8
NS5438R CGGTTCGGTAGGTTGCAAGT 59 3 11
NS5395Probe CTGCTGCGTCAAAAACGCGCAA 69 2 8
NS5 NS5618F GGCTCACGCCCAGATGTG 60 3 3
NS5688R TGATGGCGGCGAATCC 59 2 5
NS5638Probe CGTTGTACTACTTCCATCGGAGAGATCTGCG 69 5 8