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. 2010 Mar 2;11(3):R25. doi: 10.1186/gb-2010-11-3-r25

Figure 2.

Figure 2

Simulations show TMM normalization is robust and outperforms library size normalization. (a) An example of the simulation results showing the need for normalization due to genes expressed uniquely in one sample (orange dots) and asymmetric DE (blue dots). (b) A lower false positive rate is observed using TMM normalization compared with standard normalization.