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. Author manuscript; available in PMC: 2011 Mar 9.
Published in final edited form as: Biochemistry. 2010 Mar 9;49(9):2018–2030. doi: 10.1021/bi902027z

Table 1.

pH dependence of McGhee-von Hippel logKobs and SKobs as a function of amino acid composition

pH logKobsa SKobsb logK0b
(1 M Na+)
Qmaxc (%)
KWKK
(24.4 mM Na+)
5.2 5.06 ± 0.02 −3.06 ± 0.09 0.10 ± 0.12 0.91 ± 0.01
6.0 4.88 ± 0.01 −3.05 ± 0.06 0.01 ± 0.09 0.91 ± 0.01
7.0 4.69 ± 0.02 −2.94 ± 0.06 −0.06 ± 0.08 0.91 ± 0.02
8.0 4.16 ± 0.01 −2.59 ± 0.06 −0.01 ± 0.09 0.91 ± 0.02
8.7 3.77 ± 0.02 −2.45 ± 0.11 −0.13 ± 0.17 0.87 ± 0.01d
HWKK
(9.8 mM Na+)
5.2 5.98 ± 0.02 −2.84 ± 0.10 0.25 ± 0.15 0.92 ± 0.02
6.0 5.23 ± 0.02 −2.55 ± 0.09 0.09 ± 0.12 0.93 ± 0.01
7.0 4.59 ± 0.02 −2.21 ± 0.06 0.11 ± 0.11 0.93 ± 0.01
8.0 3.83 ± 0.02 −1.93 ± 0.07 −0.01 ± 0.12 0.88 ± 0.01e
8.7 3.38 ± 0.02 −1.64 ± 0.13 0.14 ± 0.24 0.81 ± 0.02e
a

Determined by global nonlinear least squares analysis of data collected at 25 °C across multiple oligopeptide concentrations at the specified salt concentration using the noncooperative McGhee-von Hippel equation (eq. 1) with the indicated Qmax and n = 5. Errors represent 95% confidence intervals.

b

SKobs and logK0 values were calculated by nonlinear least squares analysis of aggregate logKobs versus [Na+] data from reverse titrations and saltbacks. Saltback logKobs data were obtained using the indicated Qmax and n = 5 via eq. 14.

c

Calculated via model-independent ligand binding density analysis (42) of reverse titration data at the specified salt concentration.

d

When binding was weaker than Kobs ≲ 104 M−1, Qmax was found by ligand binding density analysis using data collected at the same pH but lower salt concentration to improve the accuracy of the determination (cf. Figure S1). At high pH, Qmax is reported at 12.4 mM Na+ for KWKK

e

When binding was weaker than Kobs ≲ 104 M−1, Qmax was found by ligand binding density analysis using data collected at the same pH but lower salt concentration to improve the accuracy of the determination (cf. Figure S1). At high pH, Qmax is reported at 5.4 mM Na+ for HWKK.