Table 1. General features of the Cupriavidus metallidurans CH34 genome.
Feature | Chromosome 1 | Chromosome 2 | Plasmid 1 | Plasmid 2 |
(CHR1) | (CHR2) | (pMOL28) | (pMOL30) | |
Size (bp) | 3,928,089 | 2,580,084 | 171,459 | 233,720 |
G + C ratio (mol %) | 63.82 | 63.60 | 60.50 | 60.13 |
tRNA | 54 | 8 | 0 | 0 |
rRNA operons | 2 | 2 | 0 | 0 |
IS elements | 30 | 19 | 3 | 5 |
Transposable elements | 8 | 7 | 2 | 2 |
Genomic Islands | 11 | 0 | 3 | 2 |
Total number of CDSs | 3,766 | 2,493 | 175 | 283 |
Overlapping CDSs | 104 | 92 | 2 | 13 |
CDSs with assigned function | 2,784 | 1,468 | 100 | 166 |
Conserved hypothetical | 690 | 478 | 54 | 52 |
Hypothetical | 250 | 292 | 15 | 54 |
CDSs assigned to COGs | 3,045 | 1,888 | 77 | 123 |
Genes involved in transport | 433 | 288 | 5 | 16 |
Sigma factors | 10 | 7 | 1 | 0 |
bug genes | 37 | 87 | 0 | 1 |