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. Author manuscript; available in PMC: 2010 May 6.
Published in final edited form as: Annu Rep Comput Chem. 2009 Jan 1;5:23–48. doi: 10.1016/S1574-1400(09)00502-7

Figure 3.

Figure 3

Time series for the torsion connecting the ionone ring to the chain of rhodopsin’s retinal ligand. All three panels show the same trajectory, cut at 50 ns, 150 ns, and 1600 ns, respectively. The black line in the bottom panel shows the data smoothed over a 10 ns window.