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. Author manuscript; available in PMC: 2010 May 6.
Published in final edited form as: Annu Rep Comput Chem. 2009 Jan 1;5:23–48. doi: 10.1016/S1574-1400(09)00502-7

Figure 8.

Figure 8

Projection of rhodopsin fluctuations onto the first two modes derived from principal component analysis. As with Figure 7, this method directly visualizes substates in the trajectory.