Table 1. Energetics and structural parameters for the lowest-energy conformers of bradykinin protomers.
N-ter | C-ter | PA | GB | IR | SB | sHB | iHB | HB | ||||
= 0 | ||||||||||||
0 | + | 0 | − | 0 | 380 | 409 | 368 | 2 | 1 | 2 | 5 | 1 |
0 | 0 | + | − | 10 | 380 | 409 | 368 | 2 | 1 | 2 | 4 | 3 |
+ | 0 | 0 | − | 49 | 542 | 535 | 540 | 2 | 1 | 1 | 5 | 0 |
0 | 0 | 0 | 0 | 57 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 |
= 1+ | ||||||||||||
0 | + | + | − | 0 | 380 | 409 | 368 | 3 | 2 | 3 | 2 | 0 |
0 | + | 0 | 0 | 46 | 0 | 0 | 0 | 1 | 0 | 0 | 3 | 4 |
0 | 0 | + | 0 | 63 | 0 | 0 | 0 | 1 | 0 | 0 | 4 | 1 |
+ | 0 | + | − | 67 | 542 | 535 | 540 | 3 | 2 | 2 | 2 | 3 |
+ | + | 0 | − | 112 | 542 | 535 | 540 | 3 | 1 | 2 | 4 | 0 |
+ | 0 | 0 | 0 | 152 | 162 | 126 | 172 | 1 | 0 | 0 | 3 | 3 |
= 2+ | ||||||||||||
+ | + | + | − | 0 | 542 | 535 | 540 | 4 | 3 | 4 | 3 | 1 |
0 | + | + | 0 | 77 | 0 | 0 | 0 | 2 | 0 | 0 | 6 | 1 |
+ | + | 0 | 0 | 85 | 162 | 126 | 172 | 2 | 0 | 0 | 5 | 1 |
+ | 0 | + | 0 | 93 | 162 | 126 | 172 | 2 | 0 | 0 | 5 | 2 |
In each row the following information is reported: protonation pattern (first column); energy difference with respect to the most stable protomer ( in kJ/mol); (intrinsic) internal energy variation (), proton affinity (PA) and gas-phase basicity (GPB) relative to the most favourable protomer (see text for a definition of these quantities; all values are in kJ/mol); ionized residues (IR); salt-bridges (SB); hydrogen bonds between salt-bridged residues (sHB); ionized hydrogen bonds where either the donor or the acceptor is ionized, A or D H-bonds (iHB); neutral hydrogen bonds (HB). Hydrogen bonds are identified according to the donor-acceptor () distance and the donor-acceptor H-bond angle (). The following geometric criterion was adopted: Å and . A salt-bridge is formed if the distance between any oxygen atom of the acidic residue and any protonable nitrogen atom of the basic residue is less than 4.0 Å.