Figure 7. Quantification of hemimethylated GATC sites in oriC and oriI in dam and seqA mutants of E. coli.
(A) Schematic maps of origin regions of E. coli chromosome and V. cholerae chromosome I. The regions are very similar except that the V. cholerae origin (oriI) has an extra DnaA box (R6). Other details are described in Figure 5A. The tau and I sites of the E. coli origin (oriC) that also bind DnaA are yet to be described in oriI. The two GATC sites studied here for their methylation states are shown by vertical arrows. (B) The WT either had oriC (MG1655) or oriI (MG1655ΔoriC::oriI). The GATC sites probed were located either within the origins (oriC or oriI) or external to the origin (ext) at about 300 kb away. The same ext marker was used for both the strains. The numbers below the figure show the percent of hemimethylated DNA at the origins. N.A. stands for ‘not applicable’; in these lanes the DNA being from a dam mutant is unmethylated, and is all cleaved both at the origin and the external markers. An uncharacterized cross-reacting band appears in the dam mutants only (arrow head).
