Table 3. Base accuracy of MuSICA 2 assembly.

		Library 1	Library 1+2
Total reference full-length cDNA length	(A)	325,967	328,279
Total aligned output cDNA length	(B)	317,709	320,850
Total matches	(C)	315,861	317,168
Total mismatches	(D)	71	67
Total insertions	(E)	245	269
Total deletions	(F)	1,458	1,594
Match ratio	(C/B)	99.42%	98.85%

A: The total number of base pairs in the reference full-length cDNA clones. Note that non-reference clones are excluded; B: the total number of base pairs in the output contigs; C: the number of base pairs matched to the reference full-length cDNA clones in the alignments (B); D: the number of base pairs mismatched to the reference full-length cDNA clones in the alignments (B); E: the number of base pairs inserted (e.g., a reconstructed contig is longer than the reference clone) in the alignments (B); F: the number of base pairs deleted in the alignments (B).