Table 3. Base accuracy of MuSICA 2 assembly.
Library 1 | Library 1+2 | ||
Total reference full-length cDNA length | (A) | 325,967 | 328,279 |
Total aligned output cDNA length | (B) | 317,709 | 320,850 |
Total matches | (C) | 315,861 | 317,168 |
Total mismatches | (D) | 71 | 67 |
Total insertions | (E) | 245 | 269 |
Total deletions | (F) | 1,458 | 1,594 |
Match ratio | (C/B) | 99.42% | 98.85% |
A: The total number of base pairs in the reference full-length cDNA clones. Note that non-reference clones are excluded; B: the total number of base pairs in the output contigs; C: the number of base pairs matched to the reference full-length cDNA clones in the alignments (B); D: the number of base pairs mismatched to the reference full-length cDNA clones in the alignments (B); E: the number of base pairs inserted (e.g., a reconstructed contig is longer than the reference clone) in the alignments (B); F: the number of base pairs deleted in the alignments (B).