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. Author manuscript; available in PMC: 2011 Jan 1.
Published in final edited form as: J Proteome Res. 2010 Jan;9(1):104–112. doi: 10.1021/pr900397n

Table 2.

Predictive Accuracies Obtained by Using Each of the 10 Peak Sets Derived from This Work As Input to SVM Classifiersa

peak sets number of selected
peaks in each set
accuracy from 500 test sets
peaks selected
sensitivity specificity accuracy
Peak Set 1 9 99.99% 99.99% 99.99% 1580, 1996, 2040, 2187, 2192, 2851, 2893, 4311, 4502
Peak set 2 9 99.99% 99.95% 99.97% 1580, 1996, 2040, 2187, 2192, 2286, 2851, 4311, 4502
Peak Set 3 12 99.64% 100% 99.79% 1580, 1800, 1996, 2040, 2187, 2244, 2511, 2851, 4311, 4502, 4516
Peak Set 4 11 99.99% 99.98% 99.99% 1580, 1996, 2040, 2151, 2187, 2214, 2411, 2711, 2851, 4311, 4502
Peak Set 5 11 100% 99.97% 99.99% 1580, 1996, 2040, 2187, 2214, 2411,2490, 2851, 2511, 4311, 4502
Peak Set 6 9 99.99% 99.96% 99.98% 1580, 1996, 2040, 2187, 2192, 2286, 2851, 4311, 4502
Peak Set 7 7 99.99% 99.97% 99.98% 1580, 1996, 2040, 2187, 2851, 4311, 4502
Peak Set 8 9 99.90% 99.90% 99.90% 1580, 1800, 1996, 2040, 2187, 2411, 2851, 4311, 4502
Peak Set 9 7 100% 99.98% 99.99% 1580, 1996, 2040, 2187, 2851, 4311, 4502
Peak Set 10 10 100% 99.90% 99.96% 1580, 1996, 2040, 2187, 2411, 2851, 3604, 4311, 4502, 4516
a

Results were obtained by calculating the average prediction accuracy of 500 test sets for each peak set.